[1] "2025-04-30 02:08:46 MDT" [1] "1612" "161219" "d354" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161219a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 74283 63 [1] 74283 [1] 74283 [1] "testing skipping spike filter" [1] 74283 [1] 74283 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:08:50 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.037, ave o2scale2 = 0.845" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "18 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.037, ave o2scale2 = 0.845" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "18 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:08:50 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:08:50 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:09:03 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:09:04 MDT" [1] "reading in recalculated plot titles" [1] "Removed 19 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1219 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:09:07 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.964 co2off = 413.9 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.35 minutes" [1] "Average Cal: 7.91 minutes" [1] "Shortest Cal: 5.21 minutes" [1] "Longest Cal: 8.45 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 3 [3,] 4 6 [4,] 7 8 [5,] 9 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 3 10 18 0.007433073 0.01321759 0.01250071 1 -28.07262 212.1052 4 4 267 275 0.195769010 0.20156435 0.19940391 2 -14.72807 122.0716 5 2 276 284 0.202298351 0.20813851 0.20595670 2 -37.05876 229.2513 7 2 552 560 0.404319763 0.41015972 0.40797100 3 -37.00888 232.5780 8 4 561 569 0.410899769 0.41670075 0.41450980 3 -14.67976 106.1067 9 3 570 578 0.417420515 0.42320052 0.42246404 3 -28.02190 217.5632 11 4 838 846 0.612248003 0.61808536 0.61590968 2 -14.65382 113.2669 12 2 847 852 0.618808652 0.62242821 0.62134053 2 -36.96709 231.3493 15 2 1116 1123 0.821289005 0.82642086 0.82459699 3 -37.02239 229.5749 16 4 1124 1132 0.827151476 0.83296597 0.83079142 3 -14.70796 111.7615 17 3 1133 1140 0.833681105 0.83884259 0.83846810 3 -28.06106 212.3889 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9619523 1.180961 -0.0001425084 -2.2008618 0.003813256 2.3758006 4 0.9620281 1.180802 0.0025735952 1.6694368 0.005976127 4.6336807 5 0.9620230 1.180830 -0.0048203493 -2.1827638 0.013317508 9.6173348 7 0.9638132 1.183039 -0.0020490031 -0.4737059 0.005199159 2.8840146 8 0.9639335 1.183064 0.0033569431 -1.1491617 0.007813452 3.2398103 9 0.9639129 1.183109 -0.0026196185 1.2610450 0.007530913 1.3999715 11 0.9666087 1.186082 -0.0003315203 1.4534595 0.004033136 3.5230043 12 0.9666764 1.186129 -0.0079131752 1.4658013 0.011013782 2.1458439 15 0.9666933 1.186160 -0.0025804656 -0.4234146 0.005126283 4.3529509 16 0.9667696 1.186230 0.0010437748 -0.2490801 0.005628108 1.8947544 17 0.9664654 1.185905 -0.0014868866 1.1898535 0.004203421 0.9074348 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 420.326 co2l1 = 0.963 co2l0 = 0.077" [1] "co2l0 = -141.31 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "76 out of 135 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "59 out of 1054 1-min values rejected as stack air" [1] "59 out of 1054 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"