[1] "2025-04-30 02:08:17 MDT" [1] "1612" "161218" "d353" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161218a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 82320 63 [1] 82320 [1] 82320 [1] "testing skipping spike filter" [1] 82320 [1] 82320 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:08:21 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.041, ave o2scale2 = 0.847" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "93 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.041, ave o2scale2 = 0.847" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "93 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:08:21 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:08:21 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:08:35 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:08:36 MDT" [1] "reading in recalculated plot titles" [1] "Removed 93 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1278 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:08:41 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.963 co2off = 416 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 7.37 minutes" [1] "Average Cal: 7.41 minutes" [1] "Shortest Cal: 5.18 minutes" [1] "Longest Cal: 8.47 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 7 [4,] 8 9 [5,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 144 147 0.1548633 0.1584594 0.1580978 2 -36.99191 233.7095 3 4 148 153 0.1613803 0.1650003 0.1639188 2 -14.66989 131.6410 6 4 411 418 0.3638299 0.3689505 0.3671151 2 -14.49836 107.1890 7 2 419 427 0.3696887 0.3754238 0.3732798 2 -36.83105 230.1760 10 2 695 702 0.5718661 0.5769214 0.5751114 3 -36.96785 230.7372 11 4 703 711 0.5776388 0.5834948 0.5813065 3 -14.63347 117.0217 12 3 712 720 0.5842216 0.5900685 0.5893421 3 -27.98068 218.8965 14 4 978 986 0.7793772 0.7852300 0.7830234 2 -14.81812 114.6255 15 2 987 994 0.7859710 0.7910554 0.7892325 2 -37.14773 233.8627 17 2 1262 1270 0.9876897 0.9935705 0.9913406 2 -37.04647 227.7682 18 4 1271 1278 0.9942867 0.9993832 0.9975643 2 -14.72833 110.1360 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9602861 1.180182 -0.0035408498 2.554952e-14 0.002607456 0.000000 3 0.9605301 1.180521 0.0067304786 -8.803361e+00 0.010267563 13.548302 6 0.9648741 1.184674 -0.0026160361 -7.419406e-01 0.005936173 3.587409 7 0.9650084 1.184780 -0.0024301663 -7.620463e-01 0.005624355 5.029610 10 0.9619025 1.180765 0.0006627811 1.879013e+00 0.001634428 3.689961 11 0.9618843 1.180728 0.0023546244 -1.203411e+00 0.006567444 3.506247 12 0.9617284 1.180734 -0.0041068741 -9.440641e+00 0.009642532 10.954148 14 0.9585207 1.177033 0.0012407628 -5.037385e-01 0.004099420 1.831627 15 0.9585679 1.177050 -0.0026073925 5.401507e-02 0.009165720 2.814438 17 0.9618529 1.180795 -0.0009952271 -7.274826e-01 0.003411809 4.205226 18 0.9618319 1.180799 0.0011968911 2.510349e+00 0.003078064 5.666078 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 420.299 co2l1 = 0.963 co2l0 = 0.116" [1] "co2l0 = -141.93 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "5 out of 5 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1128 1-min values rejected as stack air" [1] "0 out of 1128 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"