[1] "2025-04-30 02:07:54 MDT" [1] "1612" "161217" "d352" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161217a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 81779 63 [1] 81779 [1] 81779 [1] "testing skipping spike filter" [1] 81779 [1] 81779 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:07:58 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.056, ave o2scale2 = 0.857" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "68 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.056, ave o2scale2 = 0.857" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "66 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:07:58 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:07:58 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:08:06 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:08:08 MDT" [1] "reading in recalculated plot titles" [1] "Removed 66 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 4 row(s) with variable TFCELL" [1] "TEMP: 1289 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:08:12 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.963 co2off = 410.12 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.34 minutes" [1] "Average Cal: 7.86 minutes" [1] "Shortest Cal: 1.02 minutes" [1] "Longest Cal: 9.33 minutes" [1] "Removed 4 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 9 [5,] 10 10 [6,] 11 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 120 128 0.08779161 0.09361241 0.09143842 3 -37.31752 229.6711 3 4 129 137 0.09435182 0.10014528 0.09797200 3 -15.00280 117.0633 5 3 147 155 0.10735460 0.11314170 0.11242561 3 -28.35703 221.6835 7 4 404 412 0.29610680 0.30193316 0.29974988 2 -15.25972 113.6870 8 2 413 420 0.30268163 0.30780596 0.30596831 2 -37.61160 231.8584 10 2 681 689 0.50420868 0.51003845 0.50784064 3 -37.51392 227.0122 11 4 690 698 0.51077700 0.51656331 0.51440518 3 -15.18209 118.8603 12 3 699 706 0.51729117 0.52229823 0.52194096 3 -28.53485 212.7712 14 4 964 972 0.71258492 0.71844832 0.71626020 1 -14.99318 116.7717 16 4 982 991 0.75302734 0.75950506 0.75698079 1 -14.97365 105.2457 19 4 1237 1245 0.94667503 0.95251898 0.95034319 1 -14.86209 112.7563 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9480599 1.167356 -0.0004410542 1.2983824 0.001697392 4.481392 3 0.9476416 1.167011 0.0009421517 -0.7714055 0.006068449 1.790611 5 0.9469843 1.166426 -0.0040794229 3.3646946 0.010324416 3.669660 7 0.9411420 1.161023 -0.0012408018 2.0748777 0.004773224 5.359143 8 0.9407808 1.160611 -0.0060080532 -0.9070275 0.012065036 4.951036 10 0.9439417 1.163608 -0.0003216873 -2.6894685 0.003006441 7.917250 11 0.9440552 1.163582 0.0014311141 3.2125109 0.005294314 9.864620 12 0.9443838 1.164097 0.0003240120 -3.1159894 0.003133655 2.267142 14 0.9494885 1.168835 0.0004510363 0.4811470 0.006985889 3.501306 16 0.9502355 1.169741 0.0019477761 3.4977156 0.008622537 12.984610 19 0.9541470 1.173580 0.0007972611 -3.6486326 0.001961497 8.747034 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 420.658 co2l1 = 0.963 co2l0 = 0.078" [1] "co2l0 = -143.33 co2l1 = 0.23" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "15 out of 70 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "55 out of 1110 1-min values rejected as stack air" [1] "55 out of 1110 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"