[1] "2025-04-30 02:07:22 MDT" [1] "1612" "161216" "d351" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161216a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 82620 63 [1] 82620 [1] 82620 [1] "testing skipping spike filter" [1] 82620 [1] 82620 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:07:26 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.045, ave o2scale2 = 0.851" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "19 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.045, ave o2scale2 = 0.851" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "19 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:07:26 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:07:26 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:07:41 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:07:42 MDT" [1] "reading in recalculated plot titles" [1] "Removed 19 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1357 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:07:49 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.964 co2off = 425.01 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.34 minutes" [1] "Average Cal: 8.12 minutes" [1] "Shortest Cal: 7.3 minutes" [1] "Longest Cal: 8.42 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 62 69 0.04676658 0.05183579 0.05001666 2 -14.45889 111.5374 3 2 70 77 0.05256036 0.05767891 0.05583374 2 -36.77706 230.0860 5 2 346 354 0.25436739 0.26021152 0.25801712 3 -36.79071 224.3082 6 4 355 363 0.26094774 0.26672645 0.26455551 3 -14.47462 110.4697 7 3 364 372 0.26744575 0.27326889 0.27253411 3 -27.81387 213.8019 9 4 632 639 0.46359080 0.46867960 0.46685036 2 -14.47801 113.0066 10 2 640 648 0.46940385 0.47519578 0.47302960 2 -36.81205 230.1646 13 2 917 925 0.67104936 0.67684436 0.67465946 3 -36.87533 237.7734 14 4 926 934 0.67755937 0.68335249 0.68118574 3 -14.56179 126.6870 15 3 935 943 0.68408148 0.68989728 0.68917386 3 -27.91196 218.9964 17 4 1196 1204 0.87928805 0.88507072 0.88291082 2 -14.68371 108.1063 18 2 1205 1213 0.88580286 0.89159216 0.88942221 2 -37.01500 245.1894 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9569248 1.175672 2.945779e-03 -0.4762202 0.005880771 3.650661 3 0.9570425 1.175768 -2.953022e-03 1.4569000 0.007208177 3.043753 5 0.9583461 1.177046 7.479617e-04 0.5145530 0.004542438 4.259962 6 0.9583362 1.177104 4.577388e-03 -1.2150481 0.010546550 3.756814 7 0.9584189 1.177033 -1.895540e-03 2.7913661 0.005724695 3.750496 9 0.9581821 1.177041 9.178224e-04 -1.0657835 0.004572236 3.195892 10 0.9582424 1.177072 -8.376632e-04 -1.5176820 0.006326967 3.636658 13 0.9576884 1.176577 -2.484534e-03 0.9017656 0.005929020 6.344105 14 0.9575247 1.176414 -5.156608e-05 1.1231095 0.001826353 6.333350 15 0.9575489 1.176381 -2.785807e-03 -1.4110119 0.006566934 1.945618 17 0.9550254 1.174032 6.201947e-04 -2.0174797 0.002171283 6.347067 18 0.9552392 1.174239 -9.607923e-04 4.6115867 0.003608439 14.404631 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 420.169 co2l1 = 0.963 co2l0 = 0.069" [1] "co2l0 = -140.6 co2l1 = 0.213" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "16 out of 60 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "44 out of 1191 1-min values rejected as stack air" [1] "44 out of 1191 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"