[1] "2025-04-30 02:06:51 MDT" [1] "1612" "161215" "d350" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161215a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 82740 63 [1] 82740 [1] 82740 [1] "testing skipping spike filter" [1] 82740 [1] 82740 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:06:55 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.047, ave o2scale2 = 0.852" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "22 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.047, ave o2scale2 = 0.852" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "22 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:06:55 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:06:55 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:07:10 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:07:11 MDT" [1] "reading in recalculated plot titles" [1] "Removed 23 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1355 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:07:17 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.964 co2off = 424.82 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.3 minutes" [1] "Average Cal: 8.06 minutes" [1] "Shortest Cal: 7.24 minutes" [1] "Longest Cal: 8.45 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 4 12 0.004396701 0.01014618 0.007994031 3 -36.44877 235.9233 3 4 13 19 0.010867101 0.01666997 0.014625556 3 -14.11965 115.1667 4 3 20 27 0.017425116 0.02244997 0.022091985 3 -27.47762 214.2838 6 4 281 288 0.213714294 0.21875081 0.216949831 2 -14.25671 110.5404 7 2 289 297 0.219468779 0.22523608 0.223074760 2 -36.61203 225.0843 10 2 566 573 0.421692303 0.42682529 0.424998384 3 -36.75642 230.8490 11 4 574 582 0.427555990 0.43342106 0.431230961 3 -14.41735 109.1145 12 3 583 591 0.434143953 0.43992954 0.439209819 3 -27.75955 207.8846 14 4 848 856 0.629351968 0.63515440 0.632956353 2 -14.39074 112.8280 15 2 857 865 0.635887616 0.64165871 0.639501782 2 -36.72108 226.8034 17 2 1134 1141 0.838431424 0.84354595 0.841723071 3 -36.76316 229.1130 18 4 1142 1150 0.844258796 0.85004847 0.847885512 3 -14.42278 112.0895 20 3 1160 1168 0.857275463 0.86304181 0.862322116 3 -27.76162 215.4535 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9580331 1.176580 -0.0004762857 0.75180761 0.002308757 3.534679 3 0.9577807 1.176230 0.0011108006 0.71581706 0.004020844 4.937875 4 0.9576371 1.176148 -0.0029012594 -2.99250638 0.005734217 2.181618 6 0.9555901 1.174319 -0.0053933734 -0.43057774 0.010788714 1.334488 7 0.9553211 1.174027 -0.0035005192 0.32310819 0.009160310 1.561418 10 0.9524770 1.171462 -0.0024087309 0.47474482 0.004806192 2.845881 11 0.9525521 1.171570 0.0010022672 -0.28102566 0.005715118 2.574044 12 0.9529331 1.171887 -0.0017134248 -0.16550375 0.004592003 1.458023 14 0.9549865 1.173883 -0.0019362648 -0.54998082 0.004917738 3.731244 15 0.9551659 1.173999 -0.0027088469 -0.01693582 0.006444547 0.722457 17 0.9561053 1.174882 -0.0018849729 -3.14637605 0.004384766 6.404269 18 0.9560805 1.174848 0.0045164820 0.40272449 0.010634240 1.794146 20 0.9561821 1.175021 -0.0046083435 1.35412401 0.012180897 1.404117 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 419.955 co2l1 = 0.963 co2l0 = 0.12" [1] "co2l0 = -140.53 co2l1 = 0.218" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "40 out of 50 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "10 out of 1169 1-min values rejected as stack air" [1] "10 out of 1169 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"