[1] "2025-04-30 02:06:22 MDT" [1] "1612" "161214" "d349" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161214a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 82740 63 [1] 82740 [1] 82740 [1] "testing skipping spike filter" [1] 82740 [1] 82740 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:06:26 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.036, ave o2scale2 = 0.845" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "48 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.036, ave o2scale2 = 0.845" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "50 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:06:27 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:06:27 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:06:41 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:06:43 MDT" [1] "reading in recalculated plot titles" [1] "Removed 50 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1328 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:06:46 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.967 co2off = 414.85 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.31 minutes" [1] "Average Cal: 8.07 minutes" [1] "Shortest Cal: 7.28 minutes" [1] "Longest Cal: 8.51 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 235 243 0.1716432 0.1773982 0.1752203 3 -35.75280 227.5489 3 4 244 252 0.1781348 0.1838622 0.1817159 3 -13.43798 106.6821 4 3 253 260 0.1845842 0.1896425 0.1892848 3 -26.77698 199.4572 6 4 520 528 0.3799502 0.3857313 0.3835600 2 -13.65376 112.8823 7 2 529 536 0.3864441 0.3915359 0.3897194 2 -35.98761 228.1030 9 2 795 803 0.5880124 0.5937813 0.5916161 3 -36.13217 229.9542 10 4 804 812 0.5945095 0.6003422 0.5981747 3 -13.82816 116.8379 12 3 822 829 0.6075833 0.6127112 0.6123429 3 -27.17623 219.0925 14 4 1071 1079 0.7964994 0.8022674 0.8001142 2 -13.97875 112.8167 15 2 1080 1088 0.8029882 0.8088989 0.8066867 2 -36.32846 231.4365 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9725948 1.190751 -0.0034108263 -0.18498300 0.008523285 1.9082846 3 0.9725022 1.190542 0.0006383736 4.30563603 0.005635027 11.2208457 4 0.9723526 1.190430 -0.0009410425 -10.88997134 0.003134153 7.9326672 6 0.9673169 1.185215 -0.0015459544 0.47969027 0.003868851 2.3559226 7 0.9672453 1.185178 -0.0021626196 -0.71487013 0.006321271 3.5765359 9 0.9635732 1.181618 -0.0015477864 0.06343579 0.003619377 2.0411210 10 0.9633542 1.181317 0.0008616196 -0.38225348 0.003047125 1.8490169 12 0.9632840 1.181291 -0.0001519858 -0.59938698 0.003750556 0.4496313 14 0.9607898 1.178969 -0.0017464649 -0.05899200 0.005176570 1.8219921 15 0.9607540 1.178888 -0.0033537829 0.90406744 0.008131877 2.9042168 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 419.389 co2l1 = 0.963 co2l0 = 0.087" [1] "co2l0 = -140.64 co2l1 = 0.218" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "64 out of 150 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "86 out of 1200 1-min values rejected as stack air" [1] "86 out of 1200 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"