[1] "2025-04-30 02:05:22 MDT" [1] "1612" "161212" "d347" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161212a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 82800 63 [1] 82800 [1] 82800 [1] "testing skipping spike filter" [1] 82800 [1] 82800 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:05:26 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.028, ave o2scale2 = 0.839" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "38 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.028, ave o2scale2 = 0.839" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "38 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:05:26 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:05:26 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:05:42 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:05:43 MDT" [1] "reading in recalculated plot titles" [1] "Removed 38 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1340 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:05:46 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.964 co2off = 423.44 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.26 minutes" [1] "Average Cal: 7.78 minutes" [1] "Shortest Cal: 6.2 minutes" [1] "Longest Cal: 8.45 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 7 [4,] 8 9 [5,] 10 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 119 127 0.08812969 0.09386953 0.09172038 2 -35.27667 232.7634 3 4 128 135 0.09458848 0.09971244 0.09790391 2 -12.94342 115.0270 7 4 397 403 0.29732075 0.30234659 0.30047145 2 -12.92383 116.0744 8 2 404 412 0.30307905 0.30880556 0.30665836 2 -35.25096 230.5973 10 2 678 686 0.50515694 0.51093440 0.50876317 3 -35.26627 226.5545 11 4 687 695 0.51165425 0.51738990 0.51524189 3 -12.95021 113.7201 12 3 696 704 0.51811953 0.52389615 0.52318057 3 -26.28737 223.1793 14 4 955 963 0.71310790 0.71890784 0.71673488 2 -12.98230 110.2364 15 2 964 971 0.71964201 0.72472830 0.72290660 2 -35.30603 231.2255 18 2 1233 1241 0.92163293 0.92750006 0.92529724 3 -35.33590 228.3244 19 4 1242 1250 0.92822402 0.93407078 0.93188271 3 -13.01595 112.0853 20 3 1251 1259 0.93479308 0.94059615 0.93985676 3 -26.35469 217.5903 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9718181 1.192112 -4.352108e-05 -0.50624392 0.003902909 4.350479 3 0.9719183 1.192150 4.827097e-03 -0.96194439 0.010408130 2.327678 7 0.9727841 1.192272 2.675612e-04 0.07812982 0.001549760 1.945694 8 0.9728472 1.192303 -3.062056e-03 -0.80274579 0.008424582 3.245917 10 0.9732561 1.192395 -2.227223e-03 1.44073240 0.005129154 4.749237 11 0.9732597 1.192346 6.918486e-04 1.22112702 0.004472552 4.023836 12 0.9730938 1.192243 2.594890e-04 2.60502913 0.003896852 3.458904 14 0.9739166 1.192756 -2.315792e-03 -1.52831826 0.005368143 3.886589 15 0.9739794 1.192816 -2.176565e-03 -0.34082062 0.004883446 2.952402 18 0.9749046 1.193571 -6.229058e-04 -1.40094813 0.002101542 3.784465 19 0.9749652 1.193531 1.404805e-03 -0.93216315 0.006273127 3.629978 20 0.9750250 1.193682 -3.752625e-03 -0.84844906 0.009659705 1.121467 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 418.657 co2l1 = 0.963 co2l0 = 0.086" [1] "co2l0 = -140.67 co2l1 = 0.215" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "144 out of 385 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "241 out of 1157 1-min values rejected as stack air" [1] "241 out of 1157 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"