[1] "2025-04-30 02:04:25 MDT" [1] "1612" "161210" "d345" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161210a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 82357 63 [1] 82357 [1] 82357 [1] "testing skipping spike filter" [1] 82357 [1] 82357 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:04:29 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.03, ave o2scale2 = 0.838" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "15 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.03, ave o2scale2 = 0.838" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "15 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:04:29 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:04:29 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:04:38 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:04:40 MDT" [1] "reading in recalculated plot titles" [1] "Removed 15 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 2 row(s) with variable TFCELL" [1] "TEMP: 1353 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:04:43 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.964 co2off = 423.3 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.35 minutes" [1] "Average Cal: 8.35 minutes" [1] "Shortest Cal: 7.27 minutes" [1] "Longest Cal: 9.49 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 32 40 0.02374002 0.02962135 0.02741820 3 -35.16887 231.8361 3 4 41 49 0.03035055 0.03614661 0.03397595 3 -12.82870 110.9751 4 3 50 58 0.03688194 0.04266105 0.04192316 3 -26.19609 211.4074 6 4 320 328 0.23224948 0.23804589 0.23586750 2 -12.82014 114.6754 7 2 329 337 0.23877813 0.24460697 0.24241333 2 -35.13995 226.0006 9 2 607 615 0.44045816 0.44620168 0.44405520 3 -35.10915 225.7705 10 4 616 624 0.44691128 0.45271748 0.45054351 3 -12.78132 116.7998 12 3 634 642 0.45998568 0.46574962 0.46502910 3 -26.14015 217.7180 14 4 895 903 0.64897899 0.65478620 0.65258999 2 -12.75773 119.1862 15 2 904 912 0.65552752 0.66130943 0.65915933 2 -35.08347 230.1821 17 3 1136 1143 0.83854598 0.84432558 0.84397014 3 -26.08694 235.2055 18 2 1144 1153 0.84505431 0.85164251 0.84909234 3 -35.07595 227.3974 19 4 1154 1162 0.85235350 0.85812943 0.85596101 3 -12.76105 111.4303 20 5 1163 1170 0.86031215 0.86536065 0.86500218 NA -15.07819 127.8612 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9692749 1.192101 -0.0007607669 1.17836769 0.002791456 4.307885 3 0.9692845 1.192065 -0.0007391137 1.77692900 0.007207710 4.662615 4 0.9692949 1.192204 -0.0022254630 -6.36973902 0.005790826 7.477978 6 0.9699540 1.192639 0.0011414788 0.53578236 0.003486715 6.144402 7 0.9700323 1.192744 -0.0023831642 -1.28150963 0.006575625 3.447138 9 0.9711924 1.193721 -0.0005210489 -0.22213495 0.002056132 3.014897 10 0.9710807 1.193628 -0.0004659843 0.38504504 0.004245314 3.658774 12 0.9710946 1.193693 -0.0019904887 -1.01756309 0.004524651 1.133687 14 0.9718658 1.194347 -0.0008472344 0.07189764 0.003646616 3.290788 15 0.9719538 1.194461 -0.0023087429 -0.49784199 0.008571456 1.996198 17 0.9721888 1.194376 -0.0003908760 8.27289858 0.002751534 5.988268 18 0.9723173 1.194667 -0.0008243929 3.00985376 0.002254321 10.166988 19 0.9722797 1.194786 0.0005834284 -1.46554681 0.004162773 6.734283 20 0.9727727 1.195488 -0.0708862470 -2.38626811 0.154591220 1.741974 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 418.489 co2l1 = 0.963 co2l0 = 0.048" [1] "co2l0 = -141.37 co2l1 = 0.219" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "135 out of 237 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "102 out of 1167 1-min values rejected as stack air" [1] "101 out of 1111 Line 1 1-min values rejected as stack air" [1] "1 out of 56 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"