[1] "2025-04-30 02:03:55 MDT" [1] "1612" "161209" "d344" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161209a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 82860 63 [1] 82860 [1] 82860 [1] "testing skipping spike filter" [1] 82860 [1] 82860 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:03:59 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.032, ave o2scale2 = 0.839" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.032, ave o2scale2 = 0.839" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "0 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:03:59 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:03:59 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:04:14 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:04:16 MDT" [1] "reading in recalculated plot titles" [1] "TEMP: 1380 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:04:20 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.964 co2off = 418.73 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.34 minutes" [1] "Average Cal: 8.34 minutes" [1] "Shortest Cal: 8.25 minutes" [1] "Longest Cal: 8.46 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 264 272 0.1908078 0.1965717 0.1944000 3 -35.10576 221.4956 3 4 273 281 0.1972861 0.2030549 0.2008824 3 -12.78276 114.0091 5 3 291 299 0.2102186 0.2159986 0.2152793 3 -26.12532 215.1711 7 4 552 560 0.3995358 0.4053366 0.4031619 2 -12.81185 115.2440 8 2 561 569 0.4060744 0.4119527 0.4097494 2 -35.15046 228.4872 10 2 839 847 0.6075466 0.6133581 0.6111839 3 -35.16974 229.7514 11 4 848 856 0.6140780 0.6199138 0.6177400 3 -12.84200 107.7948 12 3 857 865 0.6206290 0.6264345 0.6257000 3 -26.18546 204.7819 14 4 1127 1135 0.8157791 0.8215107 0.8193637 2 -12.83307 116.2898 15 2 1136 1144 0.8222362 0.8280222 0.8258491 2 -35.18509 230.9830 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9697800 1.192494 -0.0029717252 -5.4939663 0.006714745 13.664704 3 0.9697427 1.192394 0.0024091016 0.6561733 0.006458746 5.946353 5 0.9698157 1.192409 -0.0018566703 -1.4073080 0.005721217 1.464954 7 0.9695150 1.192321 -0.0011077138 -1.9329490 0.003230683 4.429630 8 0.9696455 1.192405 -0.0022700577 0.3475218 0.008133318 4.179773 10 0.9689412 1.191685 -0.0002280686 -0.5162671 0.002049653 3.389534 11 0.9688336 1.191605 0.0030766952 -0.6089521 0.007119515 1.870940 12 0.9689387 1.191645 -0.0014797453 -2.8407536 0.004529377 3.031536 14 0.9685664 1.191342 -0.0010755504 0.7620867 0.006097454 2.761941 15 0.9686329 1.191468 -0.0037031410 1.9015187 0.010401376 5.819875 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 418.51 co2l1 = 0.963 co2l0 = 0.086" [1] "co2l0 = -141.33 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "114 out of 230 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "116 out of 1225 1-min values rejected as stack air" [1] "116 out of 1225 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"