[1] "2025-04-30 02:03:25 MDT" [1] "1612" "161208" "d343" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161208a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 82920 63 [1] 82920 [1] 82920 [1] "testing skipping spike filter" [1] 82920 [1] 82920 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:03:29 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.028, ave o2scale2 = 0.836" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "4 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.028, ave o2scale2 = 0.836" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "4 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:03:30 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:03:30 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:03:44 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:03:46 MDT" [1] "reading in recalculated plot titles" [1] "Removed 4 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1377 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:03:50 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.965 co2off = 414.15 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.31 minutes" [1] "Average Cal: 8.25 minutes" [1] "Shortest Cal: 7.27 minutes" [1] "Longest Cal: 8.47 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 206 214 0.1490773 0.1548554 0.1526884 2 -12.31304 113.9715 3 2 215 222 0.1555871 0.1606339 0.1588328 2 -34.64930 230.0080 5 2 492 500 0.3574225 0.3632021 0.3610441 3 -34.76004 235.2187 6 4 501 509 0.3639285 0.3696966 0.3675275 3 -12.44031 113.6788 7 3 510 518 0.3704367 0.3762057 0.3754886 3 -25.78706 217.2119 9 4 780 788 0.5657298 0.5714894 0.5693277 2 -12.51691 113.8525 10 2 789 797 0.5722085 0.5779813 0.5758158 2 -34.86930 228.2130 13 2 1066 1074 0.7739148 0.7796810 0.7775050 3 -34.99559 228.9575 14 4 1075 1083 0.7804007 0.7862835 0.7840824 3 -12.67251 112.3652 15 3 1084 1092 0.7870154 0.7928391 0.7921198 3 -26.01441 213.8163 17 4 1354 1362 0.9825349 0.9883649 0.9861677 2 -12.70091 112.2272 18 2 1363 1371 0.9890889 0.9948169 0.9926677 2 -35.04509 233.0040 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9747597 1.197523 6.950337e-04 0.9140996 0.003267552 10.2394580 3 0.9747224 1.197466 -3.684678e-03 -0.1890514 0.008576532 2.7672708 5 0.9740298 1.196750 -1.708678e-03 -0.2386055 0.004554196 3.9937296 6 0.9739463 1.196592 2.930663e-03 -3.3885028 0.008420740 8.9798014 7 0.9739142 1.196687 2.908961e-04 0.5845038 0.004458431 0.9323748 9 0.9730779 1.195775 4.998414e-04 -0.4390982 0.003791928 2.7041275 10 0.9730958 1.195741 -4.639436e-03 1.3630296 0.011762539 4.3743726 13 0.9717486 1.194431 6.822351e-05 -1.2641982 0.003672791 4.8778629 14 0.9717806 1.194399 -3.685559e-05 0.2329266 0.002768505 2.7287265 15 0.9718333 1.194580 -5.985117e-04 -3.1574863 0.004846183 3.2832150 17 0.9709470 1.193567 -1.771457e-03 1.0001292 0.004868968 3.9161836 18 0.9709758 1.193548 -5.220922e-03 0.8475685 0.012181027 3.3461864 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 418.234 co2l1 = 0.963 co2l0 = 0.078" [1] "co2l0 = -140.62 co2l1 = 0.216" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "202 out of 299 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "97 out of 1209 1-min values rejected as stack air" [1] "97 out of 1209 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"