[1] "2025-04-30 02:02:58 MDT" [1] "1612" "161207" "d342" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161207a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 82800 63 [1] 82800 [1] 82800 [1] "testing skipping spike filter" [1] 82800 [1] 82800 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:03:02 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.029, ave o2scale2 = 0.837" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "11 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.029, ave o2scale2 = 0.837" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "11 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:03:02 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:03:02 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:03:15 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:03:16 MDT" [1] "reading in recalculated plot titles" [1] "Removed 11 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1367 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:03:20 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.965 co2off = 409.89 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.3 minutes" [1] "Average Cal: 7.78 minutes" [1] "Shortest Cal: 1.05 minutes" [1] "Longest Cal: 8.41 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 7 [4,] 8 9 [5,] 10 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 4 148 156 0.1140468 0.1198374 0.1176827 2 -11.66512 117.0436 4 3 157 165 0.1205588 0.1263812 0.1256470 2 -25.01216 216.0627 6 4 425 433 0.3161272 0.3219569 0.3197892 2 -11.74815 111.5196 7 2 434 442 0.3226799 0.3284737 0.3262917 2 -34.10417 226.5324 10 2 712 720 0.5241083 0.5298685 0.5277059 3 -34.19047 227.1294 11 4 721 729 0.5305977 0.5363581 0.5341953 3 -11.88101 116.9452 12 3 730 738 0.5370826 0.5428352 0.5421202 3 -25.21678 212.9392 14 4 1000 1008 0.7324184 0.7381839 0.7360128 2 -12.00612 111.3397 15 2 1009 1017 0.7389025 0.7446688 0.7425097 2 -34.32565 236.4169 17 2 1287 1295 0.9407527 0.9465162 0.9443361 3 -34.47120 232.8053 18 4 1296 1304 0.9472352 0.9530775 0.9508819 3 -12.15794 113.2475 20 3 1314 1321 0.9603300 0.9653722 0.9650126 3 -25.50361 214.7177 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 0.9672528 1.190212 2.162795e-05 3.5150763 0.006192699 8.919947 4 0.9675115 1.190565 1.997438e-04 2.1294430 0.002687950 2.509567 6 0.9707979 1.193839 -1.043580e-03 0.5047401 0.003088086 4.278830 7 0.9709812 1.194102 -7.123157e-03 0.5351847 0.016923299 3.114234 10 0.9738982 1.197053 -2.964196e-03 2.5194513 0.006800530 6.007365 11 0.9739743 1.197079 3.406130e-03 0.1695442 0.008221101 2.372454 12 0.9740703 1.197255 -1.885488e-03 0.6927891 0.004466580 1.979997 14 0.9750208 1.198130 -1.029472e-04 -4.0844969 0.003367082 11.490733 15 0.9752006 1.198283 -5.644930e-03 3.2061364 0.013883296 7.566117 17 0.9754449 1.198380 -2.782572e-03 0.5341934 0.007216556 18.554438 18 0.9754899 1.198361 1.227418e-03 -1.1494870 0.003872647 6.734291 20 0.9754891 1.198355 -9.936893e-04 6.6265019 0.002877015 4.853547 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 417.629 co2l1 = 0.963 co2l0 = 0.081" [1] "co2l0 = -141.31 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "306 out of 450 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "144 out of 1183 1-min values rejected as stack air" [1] "144 out of 1183 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"