[1] "2025-04-30 02:02:28 MDT" [1] "1612" "161206" "d341" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161206a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 82680 63 [1] 82680 [1] 82680 [1] "testing skipping spike filter" [1] 82680 [1] 82680 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:02:32 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.031, ave o2scale2 = 0.839" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "2 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.031, ave o2scale2 = 0.839" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "2 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:02:32 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:02:32 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:02:46 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:02:48 MDT" [1] "reading in recalculated plot titles" [1] "Removed 2 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1374 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:02:53 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.966 co2off = 420.33 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.36 minutes" [1] "Average Cal: 8.29 minutes" [1] "Shortest Cal: 7.35 minutes" [1] "Longest Cal: 8.45 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 90 98 0.06607760 0.07189349 0.06972777 2 -9.928036 110.1069 3 2 99 107 0.07261811 0.07841583 0.07625268 2 -32.285357 231.2055 6 2 376 384 0.27411722 0.27991461 0.27772796 3 -32.555937 231.9508 7 4 385 393 0.28063264 0.28638906 0.28422117 3 -10.237973 121.1541 8 3 394 402 0.28710978 0.29295284 0.29221350 3 -23.602250 205.9246 10 4 663 670 0.48309508 0.48819728 0.48637317 2 -10.595302 127.0562 11 2 671 679 0.48891635 0.49471910 0.49255415 2 -32.937286 229.4269 13 2 949 957 0.69070987 0.69656664 0.69436171 3 -33.356598 231.8669 14 4 958 966 0.69728322 0.70315093 0.70096088 3 -11.038295 104.8836 16 3 976 984 0.71039115 0.71620593 0.71548029 3 -24.400830 217.1733 18 4 1236 1244 0.89934511 0.90517133 0.90299836 2 -11.406357 112.7913 19 2 1245 1253 0.90588247 0.91169343 0.90951257 2 -33.737089 225.8078 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9730793 1.194922 -0.0004799724 -0.32178355 0.001547788 10.639983 3 0.9730524 1.194958 -0.0031792492 -1.13102635 0.007792116 2.925068 6 0.9735326 1.195872 -0.0014591406 0.04402855 0.003685911 4.872962 7 0.9735130 1.195750 -0.0020580202 -0.73170879 0.007060366 6.683414 8 0.9735339 1.195851 -0.0034356897 2.77212197 0.008407276 3.194731 10 0.9715098 1.193950 -0.0027336300 -4.76630852 0.006712560 21.455747 11 0.9715418 1.194002 -0.0033490888 -1.10464954 0.008115608 5.820494 13 0.9690231 1.191237 0.0002041184 -3.92208409 0.003030199 10.970917 14 0.9688933 1.191027 -0.0025919701 -4.04439893 0.009084436 10.275885 16 0.9687674 1.190755 -0.0007206491 1.85423985 0.004267842 2.242772 18 0.9663567 1.188587 -0.0003392739 -0.86323241 0.003382845 5.762023 19 0.9664644 1.188723 -0.0019911664 1.21284349 0.005761747 3.334297 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 416.42 co2l1 = 0.963 co2l0 = 0.054" [1] "co2l0 = -141.98 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "37 out of 75 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "38 out of 1197 1-min values rejected as stack air" [1] "38 out of 1197 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"