[1] "2025-04-30 02:01:57 MDT" [1] "1612" "161205" "d340" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161205a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 82680 63 [1] 82680 [1] 82680 [1] "testing skipping spike filter" [1] 82680 [1] 82680 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:02:01 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.021, ave o2scale2 = 0.833" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "7 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.021, ave o2scale2 = 0.833" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "7 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:02:02 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:02:02 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:02:16 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:02:17 MDT" [1] "reading in recalculated plot titles" [1] "Removed 7 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1369 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:02:23 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.965 co2off = 411.39 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.34 minutes" [1] "Average Cal: 8.17 minutes" [1] "Shortest Cal: 7.27 minutes" [1] "Longest Cal: 8.55 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Removed 1 anomalous calibration row(s)" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 33 40 0.02598550 0.03110457 0.02929587 3 -31.877448 227.0562 3 4 41 49 0.03182564 0.03761250 0.03543410 3 -9.522375 112.4986 4 3 50 58 0.03834494 0.04424690 0.04351925 3 -22.813188 212.9448 6 4 317 324 0.23404578 0.23919141 0.23735673 2 -9.106281 109.5037 7 2 325 333 0.23993203 0.24572995 0.24357133 2 -31.435973 230.0221 9 2 602 610 0.44169578 0.44763438 0.44539003 3 -31.437652 232.4633 10 4 611 619 0.44836505 0.45414057 0.45198228 3 -9.099438 117.0133 12 3 629 637 0.46138877 0.46719358 0.46646559 3 -22.467241 226.9923 14 4 889 897 0.64982622 0.65563093 0.65346611 2 -9.312598 120.8378 15 2 898 906 0.65635608 0.66228973 0.66008633 2 -31.671643 230.4979 17 2 1175 1182 0.85873715 0.86378247 0.86198234 2 -31.917406 219.9770 18 4 1183 1191 0.86449673 0.87028174 0.86811417 2 -9.590688 119.4875 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9838627 1.207054 0.0001307165 0.2179128 0.001611199 1.340652 3 0.9837598 1.206928 0.0069153800 -0.8682672 0.016458478 6.430089 4 0.9839337 1.206978 -0.0007002906 -2.7303901 0.003277925 2.916153 6 0.9824808 1.204943 0.0014645110 0.1379320 0.003127437 4.741209 7 0.9825171 1.204929 -0.0008747604 1.3820314 0.003859994 6.303587 9 0.9799363 1.202039 -0.0021933768 -2.0882861 0.005822556 5.928632 10 0.9797576 1.201799 0.0030683694 -0.4329819 0.006926418 5.993648 12 0.9794174 1.201227 -0.0028635331 2.6857706 0.006681503 2.807799 14 0.9769894 1.198908 -0.0001131639 3.4583763 0.001977694 12.547580 15 0.9769319 1.199009 -0.0032922117 0.3305435 0.009214368 2.687305 17 0.9753433 1.197275 -0.0031233725 1.6031891 0.008435949 10.521360 18 0.9753364 1.197228 0.0032411779 -0.6532756 0.007881776 6.151220 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 415.146 co2l1 = 0.962 co2l0 = 0.068" [1] "co2l0 = -142.41 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "36 out of 50 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "14 out of 1204 1-min values rejected as stack air" [1] "14 out of 1204 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"