[1] "2017-09-20 23:23:06 MDT"
[1] "1612"
[1] "reading in daily output files:"
 [1] "/net/www/docs/homes/stephens/GO2/1612/161204.html"  
 [2] "/net/www/docs/homes/stephens/GO2/1612/161205.html"  
 [3] "/net/www/docs/homes/stephens/GO2/1612/161206.html"  
 [4] "/net/www/docs/homes/stephens/GO2/1612/161207.html"  
 [5] "/net/www/docs/homes/stephens/GO2/1612/161208.html"  
 [6] "/net/www/docs/homes/stephens/GO2/1612/161209.html"  
 [7] "/net/www/docs/homes/stephens/GO2/1612/161210.html"  
 [8] "/net/www/docs/homes/stephens/GO2/1612/161211.html"  
 [9] "/net/www/docs/homes/stephens/GO2/1612/161212.html"  
[10] "/net/www/docs/homes/stephens/GO2/1612/161213.html"  
[11] "/net/www/docs/homes/stephens/GO2/1612/161214.html"  
[12] "/net/www/docs/homes/stephens/GO2/1612/161215.html"  
[13] "/net/www/docs/homes/stephens/GO2/1612/161216.html"  
[14] "/net/www/docs/homes/stephens/GO2/1612/161217.html"  
[15] "/net/www/docs/homes/stephens/GO2/1612/161218.html"  
[16] "/net/www/docs/homes/stephens/GO2/1612/161219.html"  
[17] "/net/www/docs/homes/stephens/GO2/1612/lmg_1612.html"
 [1] "/net/www/docs/homes/stephens/GO2/1612/161204.html"
 [2] "/net/www/docs/homes/stephens/GO2/1612/161205.html"
 [3] "/net/www/docs/homes/stephens/GO2/1612/161206.html"
 [4] "/net/www/docs/homes/stephens/GO2/1612/161207.html"
 [5] "/net/www/docs/homes/stephens/GO2/1612/161208.html"
 [6] "/net/www/docs/homes/stephens/GO2/1612/161209.html"
 [7] "/net/www/docs/homes/stephens/GO2/1612/161210.html"
 [8] "/net/www/docs/homes/stephens/GO2/1612/161211.html"
 [9] "/net/www/docs/homes/stephens/GO2/1612/161212.html"
[10] "/net/www/docs/homes/stephens/GO2/1612/161213.html"
[11] "/net/www/docs/homes/stephens/GO2/1612/161214.html"
[12] "/net/www/docs/homes/stephens/GO2/1612/161215.html"
[13] "/net/www/docs/homes/stephens/GO2/1612/161216.html"
[14] "/net/www/docs/homes/stephens/GO2/1612/161217.html"
[15] "/net/www/docs/homes/stephens/GO2/1612/161218.html"
[16] "/net/www/docs/homes/stephens/GO2/1612/161219.html"
[1] "161204" "161219"
 [1] "161204" "161205" "161206" "161207" "161208" "161209" "161210" "161211"
 [9] "161212" "161213" "161214" "161215" "161216" "161217" "161218" "161219"
[1] "000000" "999999"
[1] "161204_mr_proc.txt, 161204_cal_periods.txt, 161204_cal_param.txt,629jogs"
[1] "161205_mr_proc.txt, 161205_cal_periods.txt, 161205_cal_param.txt,1369jogs"
[1] "161206_mr_proc.txt, 161206_cal_periods.txt, 161206_cal_param.txt,1374jogs"
[1] "161207_mr_proc.txt, 161207_cal_periods.txt, 161207_cal_param.txt,1367jogs"
[1] "161208_mr_proc.txt, 161208_cal_periods.txt, 161208_cal_param.txt,1377jogs"
[1] "161209_mr_proc.txt, 161209_cal_periods.txt, 161209_cal_param.txt,1380jogs"
[1] "161210_mr_proc.txt, 161210_cal_periods.txt, 161210_cal_param.txt,1353jogs"
[1] "161211_mr_proc.txt, 161211_cal_periods.txt, 161211_cal_param.txt,1348jogs"
[1] "161212_mr_proc.txt, 161212_cal_periods.txt, 161212_cal_param.txt,1340jogs"
[1] "161213_mr_proc.txt, 161213_cal_periods.txt, 161213_cal_param.txt,1368jogs"
[1] "161214_mr_proc.txt, 161214_cal_periods.txt, 161214_cal_param.txt,1328jogs"
[1] "161215_mr_proc.txt, 161215_cal_periods.txt, 161215_cal_param.txt,1355jogs"
[1] "161216_mr_proc.txt, 161216_cal_periods.txt, 161216_cal_param.txt,1358jogs"
[1] "161217_mr_proc.txt, 161217_cal_periods.txt, 161217_cal_param.txt,1287jogs"
[1] "161218_mr_proc.txt, 161218_cal_periods.txt, 161218_cal_param.txt,1270jogs"
[1] "161219_mr_proc.txt, 161219_cal_periods.txt, 161219_cal_param.txt,1222jogs"
[1] "161204" "161219" "d339"   "d354"  
[1] "Calculating derived concentration values"
[1] "2017-09-20 23:23:41 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 1.034, ave o2scale2 = 0.842"
[1] "redoing deltadiff calc"
[1] "reading in medium-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2017-09-20 23:24:04 MDT"
[1] "Plotting O2 and CO2 concentration data"
[1] "2017-09-20 23:24:34 MDT"
[1] "2017-09-20 23:24:40 MDT"
[1] "Reading in cylinder log"
Read 74 records
[1] "Finding cylinder IDs"
Read 428 records
[1] "position 1 cylinder CB08910 description: HS CO2 = 384.49 O2 = -529.8"
[1] "position 2 cylinder CA07671 description: MS CO2 = 393.12 O2 = -532.4"
[1] "position 3 cylinder CB08911 description: LS CO2 = 405.97 O2 = -656.3"
[1] "position 4 cylinder CB08905 description: LT CO2 = 404.14 O2 = -661.5"
[1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA"
[1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA"
[1] "Plotting jog shapes"
[1] "1612 Valve transient for  Line 1 after Line 2 = -0.4 , -0.32 , -0.17 , -0.1 , -0.14 n = 1"
[1] "1612 Valve transient for  Line 1 after Cal = -0.77 , -0.37 , 0.03 , 0.03 , 0 n = 72"
[1] "1612 Valve transient for  Line 2 after Line 1 = 1.34 , 0.83 , 0.1 , -0.11 , -0.12 n = 1"
[1] "1612 Valve transient for  Line 1 after HS = -1.56 , -0.76 , 0.02 , 0 , -0.01 n = 24"
[1] "1612 Valve transient for  Line 1 after MS = -0.79 , -0.38 , 0.01 , 0.01 , 0 n = 35"
[1] "1612 Valve transient for  Line 1 after LT = 2.52 , 1.91 , 0.81 , 0.06 , 0.02 n = 13"
[1] "1612 Valve transient for  HS after Line 1 = 0.62 , 0.31 , 0.01 , 0 , 0 n = 27"
[1] "1612 Valve transient for  HS after MS = 1.27 , 0.64 , 0.01 , 0 , 0 n = 1"
[1] "1612 Valve transient for  HS after LS = 3.03 , 1.53 , 0.02 , 0.01 , 0 n = 26"
[1] "1612 Valve transient for  MS after Line 1 = 0.01 , 0.01 , 0.01 , 0 , 0.01 n = 1"
[1] "1612 Valve transient for  MS after LS = 1.81 , 0.91 , 0.01 , 0.01 , 0 n = 17"
[1] "1612 Valve transient for  MS after LT = 1.57 , 0.8 , 0.01 , 0.01 , 0 n = 7"
[1] "1612 Valve transient for  LS after Line 1 = -1.42 , -0.71 , 0 , 0 , 0 n = 29"
[1] "1612 Valve transient for  LS after HS = -3.19 , -1.61 , -0.01 , 0 , 0 n = 31"
[1] "1612 Valve transient for  LT after HS = -0.84 , -0.39 , 0 , 0 , 0 n = 8"
[1] "1612 Valve transient for  LT after LS = 0.09 , 0.05 , 0.01 , 0.01 , 0.01 n = 10"
[1] "Plotting calibration sds and slopes"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "482 out of 3305 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "2823 out of 18118 1-min values rejected as stack air"
[1] "2820 out of 18062 Line 1 1-min values rejected as stack air"
[1] "3 out of 56 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "LMG1612loxy.d339"
[1] "LMG1612loxy.d340"
[1] "LMG1612loxy.d341"
[1] "LMG1612loxy.d342"
[1] "LMG1612loxy.d345"
[1] "LMG1612loxy.d346"
[1] "LMG1612loxy.d347"
[1] "LMG1612loxy.d348"
[1] "LMG1612loxy.d349"
[1] "LMG1612loxy.d350"
[1] "LMG1612loxy.d351"
[1] "LMG1612loxy.d352"
[1] "LMG1612loxy.d353"
[1] "LMG1612loxy.d354"
[1] "calculating wind bins"
[1] "aggregating 10 min SDs"
[1] "aggregating O2s"
[1] "calculating anomalous O2s"
[1] "aggregating anomalous O2s"
[1] "aggregating anomalous O2s diurnally"
       [,1]      [,2]
 [1,]  92.5 0.7425743
 [2,]  97.5 1.2376238
 [3,] 102.5 1.2376238
 [4,] 107.5 0.7425743
 [5,] 112.5 0.2475248
 [6,] 117.5 1.4851485
 [7,] 122.5 1.7326733
 [8,] 127.5 2.4752475
 [9,] 132.5 1.9801980
[10,] 137.5 1.7326733
[11,] 142.5 2.4752475
[12,] 147.5 1.4851485
[13,] 152.5 0.9900990
[14,] 157.5 1.2376238
[15,] 162.5 1.4851485
[16,] 167.5 1.7326733
[17,] 172.5 1.2376238
[18,] 177.5 0.9900990
[19,] 182.5 1.4851485
[20,] 187.5 0.9900990
[21,] 192.5 0.4950495
[22,] 197.5 1.2376238
[23,] 202.5 0.7425743
[24,] 207.5 1.2376238
[25,] 212.5 0.4950495
[26,] 217.5 0.7425743
[27,] 222.5 0.7425743
[28,] 227.5 0.4950495
[29,] 232.5 0.9900990
[30,] 237.5 0.4950495
[31,] 242.5 0.4950495
[32,] 247.5 0.7425743
[33,] 252.5 0.4950495
[34,] 257.5 0.7425743
[35,] 262.5 1.2376238
[36,] 267.5 0.4950495
[37,] 272.5 1.2376238
[38,] 277.5 0.4950495
[39,] 282.5 0.7425743
[40,] 292.5 0.2475248
[41,] 297.5 1.2376238
[42,] 302.5 0.0000000
[43,] 307.5 0.7425743
[44,] 322.5 0.2475248
[45,] 327.5 0.7425743
[46,] 332.5 1.4851485
[47,] 337.5 1.4851485
[48,] 342.5 0.9900990
[49,] 347.5 1.2376238
[50,] 367.5 0.7425743
[51,] 372.5 1.2376238
[52,] 377.5 1.2376238
[53,] 382.5 2.7227723
[54,] 387.5 3.4653465
[55,] 392.5 5.1980198
[56,] 397.5 3.2178218
[57,] 402.5 3.2178218
[58,] 407.5 4.7029703
[59,] 412.5 2.4752475
[60,] 417.5 2.7227723
[61,] 422.5 1.4851485
[62,] 427.5 1.9801980
[63,] 432.5 1.2376238
[64,] 437.5 1.4851485
[65,] 442.5 1.2376238
[66,] 447.5 1.2376238
       [,1]      [,2]
 [1,]  97.5 0.2475248
 [2,] 112.5 0.2475248
 [3,] 127.5 0.2475248
 [4,] 142.5 0.2475248
 [5,] 157.5 0.4950495
 [6,] 167.5 0.2475248
 [7,] 182.5 0.4950495
 [8,] 187.5 0.2475248
 [9,] 197.5 0.4950495
[10,] 212.5 0.2475248
[11,] 237.5 0.2475248
[12,] 272.5 0.2475248
[13,] 277.5 0.2475248
[14,] 292.5 0.2475248
[15,] 332.5 0.2475248
[16,] 337.5 0.2475248
[17,] 362.5 0.2475248
[18,] 367.5 0.2475248
[19,] 372.5 0.2475248
[20,] 377.5 0.2475248
[21,] 382.5 0.2475248
[22,] 387.5 0.4950495
[23,] 392.5 0.2475248
[24,] 397.5 0.2475248
[25,] 402.5 0.4950495
[26,] 407.5 0.2475248
[27,] 417.5 0.4950495
[28,] 422.5 0.4950495
[29,] 427.5 0.4950495
[30,] 432.5 0.2475248
[31,] 437.5 0.2475248
[32,] 442.5 0.2475248
     [,1] [,2]
     [,1] [,2]
[1] "making cruise html"
[1] "2017-09-20 23:25:15 MDT"
[1] "plotting cyl pressures"
[1] "LMG"
[1] "making time-series html"
[1] "making latitude gradient html"
[1] "making html"