[1] "2025-04-30 02:00:04 MDT" [1] "1611" "161128" "d333" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161128a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 70012 63 [1] 70012 [1] 70012 [1] "testing skipping spike filter" [1] 70012 [1] 70012 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:00:07 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.017, ave o2scale2 = 0.831" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "140 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.017, ave o2scale2 = 0.831" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "140 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:00:08 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:00:08 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:00:22 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:00:23 MDT" [1] "reading in recalculated plot titles" [1] "Removed 141 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1025 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:00:26 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.973 co2off = 428.17 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.42 minutes" [1] "Average Cal: 7.19 minutes" [1] "Shortest Cal: 3.11 minutes" [1] "Longest Cal: 8.52 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 188 194 0.1452065 0.1511199 0.1496508 2 -17.69421 115.6222 3 2 195 198 0.1518410 0.1540062 0.1536457 2 -39.92678 227.3597 5 2 456 464 0.3534087 0.3592828 0.3570787 3 -39.91742 232.0119 6 4 465 473 0.3600042 0.3658950 0.3636712 3 -17.68738 103.6170 8 3 483 490 0.3732030 0.3790775 0.3787158 3 -30.93137 220.8386 10 4 702 708 0.5615133 0.5673586 0.5658997 2 -17.52263 114.4412 11 2 709 717 0.5680871 0.5739779 0.5717653 2 -39.74964 233.2906 13 2 925 932 0.7697788 0.7756038 0.7737753 3 -39.64450 227.9835 14 4 933 936 0.7800223 0.7821848 0.7818249 3 -17.39169 105.7524 15 3 937 942 0.7828969 0.7865571 0.7883619 3 -30.66627 193.6634 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9804628 1.199734 0.0021230534 -1.71211294 0.0038123975 3.2770848 3 0.9805134 1.199765 -0.0102937635 0.72869031 0.0075572037 0.5349706 5 0.9813343 1.200959 -0.0001809278 1.25317977 0.0028563057 6.6897220 6 0.9814457 1.201027 0.0006441645 -1.53711599 0.0075946655 7.9184575 8 0.9819341 1.201616 -0.0018278834 -3.13366751 0.0049056466 2.3084411 10 0.9846821 1.205015 0.0039168727 -3.63773906 0.0067944141 6.1717815 11 0.9848666 1.205169 -0.0021493216 -0.09323555 0.0066901002 2.2464511 13 0.9875535 1.208404 -0.0002766734 -0.42841560 0.0039877945 4.5806707 14 0.9883038 1.209310 0.0006030636 -2.48754706 0.0004419417 1.8229436 15 0.9885096 1.209520 -0.0032550445 -7.92351737 0.0055088411 29.1215792 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 423.163 co2l1 = 0.967 co2l0 = 0.303" [1] "co2l0 = -139.44 co2l1 = 0.213" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "77 out of 83 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "6 out of 913 1-min values rejected as stack air" [1] "6 out of 913 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"