[1] "2025-04-30 01:59:31 MDT" [1] "1611" "161127" "d332" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161127a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 81840 63 [1] 81840 [1] 81840 [1] "testing skipping spike filter" [1] 81840 [1] 81840 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:59:34 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.022, ave o2scale2 = 0.835" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "17 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.022, ave o2scale2 = 0.835" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "17 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:59:35 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:59:35 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:59:51 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:59:53 MDT" [1] "reading in recalculated plot titles" [1] "Removed 17 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1346 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:59:59 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.97 co2off = 423.24 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.43 minutes" [1] "Average Cal: 8.37 minutes" [1] "Shortest Cal: 7.36 minutes" [1] "Longest Cal: 8.53 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 141 149 0.1033160 0.1091687 0.1069774 3 -39.83204 226.3977 3 4 150 158 0.1099005 0.1157352 0.1135522 3 -17.60393 112.7346 5 3 168 176 0.1230177 0.1289207 0.1281935 3 -30.88039 213.6422 7 4 423 431 0.3114436 0.3173320 0.3151315 2 -17.73356 113.3456 8 2 432 440 0.3180561 0.3238862 0.3217053 2 -39.96112 227.4384 10 2 703 711 0.5200796 0.5259317 0.5237251 3 -40.09911 232.5497 11 4 712 720 0.5266909 0.5326156 0.5303783 3 -17.87521 111.5009 12 3 721 729 0.5333624 0.5392612 0.5385075 3 -31.15789 216.1765 14 4 985 993 0.7284427 0.7342298 0.7320726 2 -17.74879 113.3602 15 2 994 1002 0.7349536 0.7407399 0.7385649 2 -39.97038 225.1752 18 2 1261 1269 0.9367518 0.9426783 0.9404474 3 -39.98113 224.9983 19 4 1270 1278 0.9434089 0.9492662 0.9470609 3 -17.73464 112.3968 20 3 1279 1287 0.9499810 0.9558448 0.9550926 3 -31.02951 215.2828 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9825218 1.201050 0.0016808256 -1.0550706 0.004777567 2.8460033 3 0.9825175 1.200983 0.0033322377 0.4591351 0.009580622 1.7925446 5 0.9823821 1.200782 -0.0029301641 -0.7065164 0.006926955 0.8919344 7 0.9790019 1.197167 0.0010413243 -1.0648172 0.003062500 3.0830720 8 0.9789731 1.197202 -0.0014809003 -0.7059907 0.005961402 2.5282592 10 0.9757127 1.193780 -0.0022699121 5.0102014 0.005354821 13.6345827 11 0.9756032 1.193734 0.0037696416 -0.6784583 0.008925087 6.1114750 12 0.9758061 1.193928 0.0005909846 0.9002045 0.002947393 1.6056729 14 0.9789501 1.197758 0.0010861184 -1.5270949 0.003976283 4.3209188 15 0.9790395 1.197935 -0.0015203871 -0.7071221 0.003831238 3.2220008 18 0.9795917 1.198533 -0.0011122988 -1.1747693 0.002917931 3.8133101 19 0.9796008 1.198582 0.0023589883 0.4559669 0.008888320 4.5251129 20 0.9795430 1.198417 -0.0024384032 -3.0519066 0.006138530 3.3050816 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 423.33 co2l1 = 0.967 co2l0 = 0.15" [1] "co2l0 = -141.14 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "5 out of 5 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1157 1-min values rejected as stack air" [1] "0 out of 1157 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"