[1] "2025-04-30 01:59:00 MDT" [1] "1611" "161126" "d331" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161126a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 81667 63 [1] 81667 [1] 81667 [1] "testing skipping spike filter" [1] 81667 [1] 81667 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:59:03 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.023, ave o2scale2 = 0.836" [1] "Removing 1 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "34 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.023, ave o2scale2 = 0.836" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "33 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:59:04 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:59:04 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:59:20 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:59:21 MDT" [1] "reading in recalculated plot titles" [1] "Removed 33 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1327 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:59:25 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.973 co2off = 428.39 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.38 minutes" [1] "Average Cal: 7.71 minutes" [1] "Shortest Cal: 2.16 minutes" [1] "Longest Cal: 8.6 minutes" [1] "Removed 4 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 7 [4,] 8 9 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 83 90 0.06278281 0.06793443 0.06607647 2 -11.89674 -56.53825 3 2 91 99 0.06867072 0.07449852 0.07230839 2 -34.26796 61.73613 5 2 359 367 0.27055281 0.27652622 0.27428189 2 -34.13724 53.54863 6 4 368 375 0.27725689 0.28240544 0.28056127 2 -11.75549 -48.62572 13 2 900 908 0.68694525 0.69269288 0.69053481 3 -39.81488 226.51414 14 4 909 917 0.69342405 0.69929100 0.69710661 3 -17.58967 111.87107 15 3 918 926 0.70002558 0.70587905 0.70513997 3 -30.86896 206.36481 17 4 1185 1193 0.89518435 0.90099818 0.89880753 2 -17.55794 118.14867 18 2 1194 1201 0.90172034 0.90679586 0.90497897 2 -39.80005 230.58359 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9703152 1.186928 -0.0031051383 2.9600928 0.006468604 7.161708 3 0.9704411 1.187079 -0.0028911125 0.1384176 0.007327429 1.339756 5 0.9740891 1.191359 0.0033676370 2.1727094 0.008508836 7.260077 6 0.9742945 1.191605 0.0046129136 1.0943043 0.009446181 10.982518 13 0.9829014 1.201293 -0.0042643339 -1.3067683 0.010283319 3.109558 14 0.9828856 1.201230 0.0020725405 -0.7773712 0.006578425 7.522195 15 0.9829643 1.201413 -0.0003171052 -2.0172355 0.005335716 2.529708 17 0.9830083 1.201382 -0.0003915876 2.2726775 0.002953635 5.519934 18 0.9830810 1.201496 -0.0053475653 3.1971812 0.011533471 6.632307 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 420.347 co2l1 = 0.964 co2l0 = 0.144" [1] "co2l0 = -123.2 co2l1 = 0.227" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "35 out of 45 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "10 out of 1170 1-min values rejected as stack air" [1] "10 out of 1170 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"