[1] "2025-04-30 01:57:54 MDT" [1] "1611" "161124" "d329" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161124a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 82320 63 [1] 82320 [1] 82320 [1] "testing skipping spike filter" [1] 82320 [1] 82320 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:57:57 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.034, ave o2scale2 = 0.844" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "3 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.034, ave o2scale2 = 0.844" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "3 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:57:58 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:57:58 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:58:15 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:58:16 MDT" [1] "reading in recalculated plot titles" [1] "Removed 3 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1368 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:58:22 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.962 co2off = 413.13 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.4 minutes" [1] "Average Cal: 8.31 minutes" [1] "Shortest Cal: 7.35 minutes" [1] "Longest Cal: 8.48 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 257 265 0.1872056 0.1930785 0.1908865 3 -34.33851 60.69389 3 4 266 274 0.1938137 0.1996543 0.1974457 3 -11.96376 -58.43673 4 3 275 283 0.2003739 0.2061353 0.2054201 3 -25.34480 44.86096 6 4 543 551 0.3955850 0.4014296 0.3992405 2 -12.01504 -57.07183 7 2 552 559 0.4021560 0.4072626 0.4054446 2 -34.38822 61.76660 9 2 826 834 0.6040745 0.6099025 0.6077199 3 -34.37679 65.96032 10 4 835 843 0.6106269 0.6164550 0.6142648 3 -12.00034 -55.27620 12 3 853 861 0.6237995 0.6296115 0.6288797 3 -25.36028 48.68043 14 4 1112 1120 0.8120961 0.8179435 0.8157571 2 -11.98194 -56.02991 15 2 1121 1129 0.8186904 0.8245220 0.8223321 2 -34.36372 60.69661 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9682586 1.184956 -0.0016115631 0.8218140 0.003834368 2.7506922 3 0.9681278 1.184821 0.0023866366 0.8069978 0.007435086 2.1846555 4 0.9681600 1.184886 -0.0017269341 -0.7138360 0.004777665 0.7340546 6 0.9669303 1.183750 0.0003521625 0.2097505 0.003815889 4.0088945 7 0.9669139 1.183743 -0.0024986906 1.1856991 0.006502974 3.4980700 9 0.9674466 1.184352 -0.0031028371 -0.6276426 0.008122653 8.0401321 10 0.9674083 1.184313 0.0015220616 0.5803305 0.006403923 3.2724667 12 0.9675614 1.184454 0.0010225365 2.0195992 0.003164512 2.1348826 14 0.9680568 1.185169 0.0005119687 1.6675009 0.003342825 4.1804730 15 0.9681671 1.185310 -0.0021689459 0.1331682 0.007004821 1.7335292 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 417.693 co2l1 = 0.961 co2l0 = 0.093" [1] "co2l0 = -104.09 co2l1 = 0.214" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "0 out of 0 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1238 1-min values rejected as stack air" [1] "0 out of 1238 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"