[1] "2025-04-30 01:57:24 MDT" [1] "1611" "161123" "d328" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161123a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 82200 63 [1] 82200 [1] 82200 [1] "testing skipping spike filter" [1] 82200 [1] 82200 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:57:28 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.033, ave o2scale2 = 0.844" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "292 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.033, ave o2scale2 = 0.844" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "292 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:57:28 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:57:28 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:57:44 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:57:46 MDT" [1] "reading in recalculated plot titles" [1] "Removed 292 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1077 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:57:49 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.963 co2off = 422.07 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.36 minutes" [1] "Average Cal: 7.42 minutes" [1] "Shortest Cal: 2.14 minutes" [1] "Longest Cal: 8.54 minutes" [1] "Removed 4 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 3 [3,] 4 5 [4,] 6 8 [5,] 9 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 2 84 89 0.1516276 0.1552572 0.1541654 1 -34.11986 63.35454 5 2 233 240 0.3543415 0.3594250 0.3576102 2 -34.37914 52.25301 6 4 241 249 0.3601408 0.3659642 0.3637742 2 -12.00538 -53.73169 10 4 478 486 0.5618094 0.5676325 0.5654423 2 -12.06012 -56.19094 11 2 487 495 0.5683785 0.5743077 0.5720907 2 -34.44887 64.25238 13 2 763 771 0.7700383 0.7758438 0.7736695 3 -34.34983 62.40073 14 4 772 780 0.7765942 0.7823849 0.7802240 3 -11.97681 -54.58957 15 3 781 788 0.7831078 0.7882050 0.7878369 3 -25.35175 46.31757 17 4 1048 1056 0.9785374 0.9843413 0.9821730 2 -11.93339 -56.08038 18 2 1057 1065 0.9850686 0.9909274 0.9887428 2 -34.31462 64.82771 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 0.9720858 1.188159 -0.0026222028 1.8908084 0.005401672 3.492765 5 0.9665414 1.182506 -0.0033323735 1.5229469 0.006719307 4.400055 6 0.9662663 1.182228 0.0003781811 -0.5140498 0.005075142 2.220192 10 0.9648296 1.181097 0.0007313164 0.6282988 0.004309091 3.765592 11 0.9648056 1.181073 -0.0022767397 -0.2675407 0.007268782 3.819958 13 0.9674604 1.183985 -0.0012550503 -0.2758396 0.002971153 2.053469 14 0.9674961 1.184024 0.0021610523 -0.4296353 0.006829775 2.150867 15 0.9675578 1.184103 -0.0028799295 -2.2391088 0.005783192 1.678484 17 0.9684406 1.185034 0.0016415042 -0.3088815 0.003717518 1.765990 18 0.9685329 1.185140 -0.0026639623 -1.9053879 0.006868883 4.550072 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 417.649 co2l1 = 0.961 co2l0 = 0.059" [1] "co2l0 = -104.57 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "8 out of 120 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "112 out of 930 1-min values rejected as stack air" [1] "112 out of 930 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"