[1] "2025-04-30 01:56:23 MDT" [1] "1611" "161121" "d326" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161121a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 81900 63 [1] 81900 [1] 81900 [1] "testing skipping spike filter" [1] 81900 [1] 81900 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:56:27 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.017, ave o2scale2 = 0.833" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "3 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.017, ave o2scale2 = 0.833" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "3 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:56:28 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:56:28 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:56:44 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:56:45 MDT" [1] "reading in recalculated plot titles" [1] "Removed 3 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1361 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:56:49 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.962 co2off = 420.89 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.4 minutes" [1] "Average Cal: 8.26 minutes" [1] "Shortest Cal: 7.34 minutes" [1] "Longest Cal: 8.5 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 84 92 0.06110732 0.06692818 0.06473767 2 -11.06663 -54.17294 3 2 93 101 0.06764705 0.07348322 0.07130027 2 -33.46589 60.69703 5 2 368 376 0.26971050 0.27556944 0.27337098 3 -33.60945 63.77678 6 4 377 385 0.27630602 0.28212002 0.27993828 3 -11.22241 -52.22412 7 3 386 394 0.28286421 0.28870382 0.28797703 3 -24.59942 46.87513 9 4 652 659 0.47881837 0.48391829 0.48208483 2 -11.19150 -34.02640 10 2 660 668 0.48464340 0.49054951 0.48834014 2 -33.57781 48.43210 11 5 669 676 0.49129303 0.49643724 0.49607525 NA -13.48719 -86.41544 13 2 935 943 0.68678492 0.69261212 0.69042330 3 -33.49665 58.73540 14 4 944 952 0.69335949 0.69918999 0.69697275 3 -11.11729 -51.84876 15 3 953 961 0.69993825 0.70580009 0.70506203 3 -24.50362 47.16034 17 4 1219 1227 0.89508756 0.90094991 0.89873627 2 -11.04399 -56.31390 18 2 1228 1236 0.90167118 0.90752075 0.90532361 2 -33.43138 58.86018 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9839993 1.200855 0.0002320761 -0.88051690 0.002078670 6.492090 3 0.9840448 1.200917 -0.0018495334 -0.22107698 0.006062684 1.931349 5 0.9813821 1.197986 -0.0006153817 1.59066663 0.001859809 5.121569 6 0.9813046 1.197849 0.0010270689 -0.49929151 0.005894345 3.790465 7 0.9812496 1.197797 -0.0010701813 1.55182580 0.004590910 1.670327 9 0.9823830 1.199138 -0.0048204219 6.62962238 0.009597363 21.190179 10 0.9824786 1.199297 -0.0005371830 3.05843839 0.003704762 12.318620 11 0.9824993 1.199289 -0.1521429860 -24.22520264 0.223710908 17.858536 13 0.9848169 1.202070 -0.0005730343 0.50074722 0.002672647 3.724734 14 0.9849004 1.202124 0.0019025207 -1.35153293 0.006046786 7.640982 15 0.9851271 1.202355 -0.0025406105 2.77746276 0.006191332 3.026309 17 0.9872282 1.204778 -0.0022264979 0.07498465 0.005495906 1.111587 18 0.9872737 1.204833 -0.0023814930 -0.68722676 0.006243330 3.012465 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 416.861 co2l1 = 0.96 co2l0 = 0.049" [1] "co2l0 = -104.61 co2l1 = 0.239" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "197 out of 385 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "188 out of 1194 1-min values rejected as stack air" [1] "188 out of 1194 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"