[1] "2025-04-30 01:55:54 MDT" [1] "1611" "161120" "d325" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161120a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 81540 63 [1] 81540 [1] 81540 [1] "testing skipping spike filter" [1] 81540 [1] 81540 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:55:58 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.005, ave o2scale2 = 0.823" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "7 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.005, ave o2scale2 = 0.823" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "7 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:55:58 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:55:58 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:56:14 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:56:15 MDT" [1] "reading in recalculated plot titles" [1] "Removed 7 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1351 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:56:18 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.964 co2off = 416.62 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.46 minutes" [1] "Average Cal: 8.32 minutes" [1] "Shortest Cal: 7.37 minutes" [1] "Longest Cal: 8.6 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 27 34 0.02070231 0.02581748 0.02398920 3 -32.75363 57.31996 3 4 35 43 0.02654230 0.03238646 0.03018868 3 -10.38039 -63.28989 4 3 44 52 0.03311913 0.03900671 0.03826149 3 -23.75266 43.62150 6 4 309 317 0.22851690 0.23443180 0.23220446 2 -10.41684 -55.01392 7 2 318 326 0.23518585 0.24115738 0.23892235 2 -32.80280 60.90556 10 2 591 599 0.43661548 0.44253724 0.44032918 3 -32.86694 64.87386 11 4 600 608 0.44327188 0.44908050 0.44691645 3 -10.50248 -51.21814 12 3 609 617 0.44982005 0.45570842 0.45498049 3 -23.88594 51.82271 14 4 873 881 0.64473516 0.65059902 0.64840174 2 -10.64943 -58.27826 15 2 882 890 0.65133721 0.65723516 0.65503303 2 -33.05279 64.87001 17 2 1157 1165 0.85277604 0.85864766 0.85645521 3 -33.23109 64.08723 18 4 1166 1173 0.85937610 0.86524986 0.86328872 3 -10.85805 -50.38710 20 3 1182 1190 0.87255628 0.87838663 0.87764761 3 -24.25202 55.44548 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.0010235 1.222725 -2.873735e-03 2.8983397 0.005845805 7.880567 3 1.0009502 1.222611 3.678681e-03 -2.6061561 0.009033049 7.986499 4 1.0009394 1.222546 -1.744809e-03 3.8298245 0.005499746 4.538729 6 1.0000469 1.220631 -5.246463e-05 -1.2253981 0.002363695 5.555865 7 1.0000770 1.220649 -3.940661e-03 -2.4950120 0.009188026 5.948224 10 0.9981440 1.217881 -2.948082e-03 0.3006860 0.006956337 2.249577 11 0.9979407 1.217611 1.595589e-03 0.2141562 0.005612221 2.354056 12 0.9979466 1.217614 -1.204350e-03 7.0974440 0.003191378 7.495426 14 0.9942307 1.212986 2.865516e-04 -0.8694665 0.002714359 3.450545 15 0.9941467 1.212880 -3.419413e-03 -0.5852321 0.011486850 4.506460 17 0.9894952 1.207171 -2.334060e-03 -1.3756056 0.006060766 4.890052 18 0.9891153 1.206688 1.739007e-04 5.7636849 0.002429860 13.995904 20 0.9885288 1.206117 -4.346729e-03 2.5933091 0.010597434 2.789014 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 416.32 co2l1 = 0.961 co2l0 = 0.04" [1] "co2l0 = -104.36 co2l1 = 0.214" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "283 out of 562 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "279 out of 1162 1-min values rejected as stack air" [1] "279 out of 1162 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"