[1] "2025-04-30 01:55:40 MDT" [1] "1611" "161119" "d324" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161119a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 42362 63 [1] 42362 [1] 42362 [1] "testing skipping spike filter" [1] 42362 [1] 42362 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:55:42 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1, ave o2scale2 = 0.819" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "49 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1, ave o2scale2 = 0.819" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "49 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:55:43 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:55:43 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:55:47 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:55:48 MDT" [1] "reading in recalculated plot titles" [1] "Removed 49 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 2 row(s) with variable TFCELL" [1] "TEMP: 653 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:55:50 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.962 co2off = 415.69 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 10.21 minutes" [1] "Average Cal: 8.7 minutes" [1] "Shortest Cal: 1.55 minutes" [1] "Longest Cal: 10.23 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 2 4 [2,] 6 7 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 5 1 10 0.4959964 0.5030927 0.5019055 NA -12.72931 -61.96712 5 3 119 128 0.6036186 0.6107069 0.6095255 3 -23.74869 48.81953 6 2 129 138 0.6114945 0.6185952 0.6158325 3 -32.76775 65.47950 7 4 139 148 0.6193875 0.6264759 0.6237194 3 -10.38563 -55.92058 8 5 149 158 0.6272637 0.6343605 0.6331791 NA -12.58734 -60.42856 10 4 397 405 0.8116111 0.8175003 0.8152849 2 -10.34505 -56.97900 11 2 406 414 0.8182312 0.8240998 0.8218777 2 -32.74170 62.60253 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 0.9984485 1.220982 -0.0012003929 3.55063196 0.0009722718 5.377309 5 0.9992985 1.221443 -0.0018081195 1.43864125 0.0055761770 2.148825 6 0.9993564 1.221507 -0.0003534685 -0.09331748 0.0019783990 3.694882 7 0.9993598 1.221472 0.0038189032 -1.17323782 0.0114311525 4.856340 8 0.9993594 1.221449 -0.0044639577 -1.72766065 0.0035797281 2.675489 10 1.0002224 1.222214 0.0010035635 -0.18958628 0.0024549134 2.443426 11 1.0002621 1.222238 -0.0033328742 1.45610188 0.0084291184 3.401873 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 416.125 co2l1 = 0.96 co2l0 = 0.102" [1] "co2l0 = -104.3 co2l1 = 0.211" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "160 out of 215 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "55 out of 528 1-min values rejected as stack air" [1] "55 out of 528 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"