[1] "2025-04-30 01:54:41 MDT" [1] "1611" "161117" "d322" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161117a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 83460 63 [1] 83460 [1] 83460 [1] "testing skipping spike filter" [1] 83460 [1] 83460 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:54:45 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.018, ave o2scale2 = 0.833" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "4 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.018, ave o2scale2 = 0.833" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "6 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:54:45 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:54:45 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:55:01 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:55:02 MDT" [1] "reading in recalculated plot titles" [1] "Removed 6 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1384 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:55:06 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.961 co2off = 416.36 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.29 minutes" [1] "Average Cal: 8.28 minutes" [1] "Shortest Cal: 8.24 minutes" [1] "Longest Cal: 8.33 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 113 121 0.08297445 0.08874187 0.08656627 3 -33.07732 60.96299 3 4 122 130 0.08946343 0.09522911 0.09307314 3 -10.68165 -49.28218 4 3 131 139 0.09594604 0.10171140 0.10098735 3 -24.05249 44.04454 6 4 402 410 0.29131956 0.29704606 0.29489441 2 -10.62553 -56.50422 7 2 411 419 0.29776348 0.30355017 0.30136851 2 -33.02033 60.42688 9 2 689 697 0.49972326 0.50550611 0.50334054 3 -32.99169 60.14587 10 4 698 706 0.50623116 0.51197810 0.50982311 3 -10.59571 -54.85765 12 3 716 724 0.51917633 0.52489954 0.52418302 3 -23.98696 39.74994 14 4 978 986 0.70769103 0.71344826 0.71128272 2 -10.61551 -55.36383 15 2 987 995 0.71416218 0.71991267 0.71774346 2 -33.00471 61.68869 17 2 1268 1276 0.91619436 0.92193116 0.91977824 3 -33.02896 60.59126 18 4 1277 1285 0.92264806 0.92837008 0.92621660 3 -10.65277 -54.41342 19 3 1286 1294 0.92908226 0.93481623 0.93410305 3 -24.03271 42.75139 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9784296 1.196595 -0.0026790507 1.4309774 0.007271737 5.6403579 3 0.9784528 1.196624 0.0014815173 1.2156907 0.005468406 5.5449636 4 0.9786384 1.196831 -0.0010806033 0.2926832 0.002610433 0.6336311 6 0.9805773 1.199102 -0.0004627442 -1.8510108 0.003580520 5.0258100 7 0.9807224 1.199275 -0.0014543447 -0.5248638 0.005136637 3.1306441 9 0.9826497 1.201303 -0.0011930340 0.2226888 0.004657823 1.8591654 10 0.9826445 1.201306 0.0037775591 0.4170586 0.010418565 2.2602806 12 0.9827159 1.201465 -0.0026388966 3.5631751 0.007518974 3.6857903 14 0.9841880 1.203210 0.0015619636 -1.0222255 0.003995510 10.6958912 15 0.9842191 1.203272 -0.0044120176 -0.9877226 0.011835335 4.8608519 17 0.9842430 1.203282 -0.0010818696 0.3346849 0.003611299 1.6038322 18 0.9841213 1.203127 0.0018781526 -0.8233437 0.005566094 2.4723942 19 0.9841126 1.203125 -0.0002564831 -2.1179233 0.006540510 2.1906172 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 416.384 co2l1 = 0.96 co2l0 = 0.062" [1] "co2l0 = -104.11 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "232 out of 460 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "228 out of 1216 1-min values rejected as stack air" [1] "228 out of 1216 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"