[1] "2025-04-30 01:54:09 MDT" [1] "1611" "161116" "d321" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161116a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 83160 63 [1] 83160 [1] 83160 [1] "testing skipping spike filter" [1] 83160 [1] 83160 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:54:13 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.022, ave o2scale2 = 0.836" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "2 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.022, ave o2scale2 = 0.836" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "2 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:54:14 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:54:14 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:54:30 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:54:31 MDT" [1] "reading in recalculated plot titles" [1] "Removed 2 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1382 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:54:36 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.96 co2off = 412.11 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.3 minutes" [1] "Average Cal: 8.24 minutes" [1] "Shortest Cal: 7.28 minutes" [1] "Longest Cal: 8.4 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 58 66 0.04231942 0.04806753 0.04589702 2 -10.44786 -55.25231 3 2 67 75 0.04878961 0.05452590 0.05237273 2 -32.85489 64.72635 5 2 347 355 0.25032046 0.25606056 0.25390591 3 -32.85487 62.19534 6 4 356 364 0.25678553 0.26252176 0.26037333 3 -10.46229 -52.69140 8 3 374 382 0.26970694 0.27547112 0.27475465 3 -23.83895 48.73775 10 4 636 644 0.45837850 0.46414248 0.46197664 2 -10.47579 -54.27587 11 2 645 653 0.46485940 0.47062633 0.46844888 2 -32.87540 65.34476 13 2 923 930 0.66725700 0.67231126 0.67050930 3 -32.93170 61.49502 14 4 931 939 0.67303281 0.67882095 0.67665569 3 -10.53248 -56.65869 15 3 940 948 0.67956053 0.68532011 0.68459959 3 -23.92760 48.39311 17 4 1210 1218 0.87494699 0.88077569 0.87858891 2 -10.61942 -55.01319 18 2 1219 1227 0.88149155 0.88730868 0.88513202 2 -33.02353 51.61480 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9777286 1.195687 1.708394e-05 -0.19746698 0.001840910 2.4602368 3 0.9777992 1.195741 -1.323197e-03 0.16080360 0.008736278 5.5513781 5 0.9786066 1.196816 3.672287e-04 -1.33912430 0.002477878 4.4685743 6 0.9785876 1.196797 -9.229625e-05 0.18839185 0.003491380 2.4941659 8 0.9788640 1.197057 2.567239e-04 0.05958779 0.001692288 0.3370890 10 0.9796759 1.197920 1.593993e-03 -1.19427658 0.003753619 3.7022064 11 0.9797455 1.197996 -7.314580e-03 0.54253373 0.017014579 2.2717612 13 0.9794620 1.197641 -7.878919e-04 1.07745932 0.002026549 4.0370795 14 0.9794526 1.197638 1.404639e-03 -0.69983948 0.006124651 1.7016772 15 0.9794766 1.197654 -4.184424e-03 -0.29455669 0.010020348 0.7466336 17 0.9785127 1.196694 1.161188e-03 3.64420592 0.003201707 10.0184722 18 0.9785710 1.196739 -3.472020e-03 0.42382392 0.008224935 2.3167098 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 416.258 co2l1 = 0.96 co2l0 = 0.067" [1] "co2l0 = -104.26 co2l1 = 0.219" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "74 out of 130 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "56 out of 1205 1-min values rejected as stack air" [1] "56 out of 1205 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"