[1] "2025-04-30 01:53:39 MDT" [1] "1611" "161115" "d320" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161115a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 83400 63 [1] 83400 [1] 83400 [1] "testing skipping spike filter" [1] 83400 [1] 83400 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:53:42 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.025, ave o2scale2 = 0.838" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.025, ave o2scale2 = 0.838" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "0 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:53:43 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:53:43 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:53:59 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:54:00 MDT" [1] "reading in recalculated plot titles" [1] "TEMP: 1389 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:54:05 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.961 co2off = 411.89 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.27 minutes" [1] "Average Cal: 8.21 minutes" [1] "Shortest Cal: 7.27 minutes" [1] "Longest Cal: 8.31 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 2 1 8 0.001011429 0.006057263 0.004256057 3 -32.73472 61.51172 2 4 9 17 0.006778733 0.012505961 0.010362661 3 -10.33818 -56.87952 4 3 27 35 0.019679253 0.025414063 0.024694763 3 -23.72454 44.39194 6 4 290 298 0.208845284 0.214597193 0.212440480 2 -10.34321 -53.35235 7 2 299 307 0.215308738 0.221075839 0.218920676 2 -32.74813 62.99011 9 2 579 587 0.416881568 0.422627980 0.420476864 3 -32.75972 58.12700 10 4 588 596 0.423345631 0.429116869 0.426953993 3 -10.36228 -55.74065 11 3 597 605 0.429834983 0.435569647 0.434855459 3 -23.74380 46.96362 13 4 869 877 0.625356944 0.631065162 0.628923640 2 -10.37785 -57.77851 14 2 878 886 0.631782407 0.637533681 0.635378328 2 -32.78772 66.53167 17 2 1159 1167 0.833750492 0.839523582 0.837349789 3 -32.79982 61.12131 18 4 1168 1176 0.840243171 0.845967911 0.843818295 3 -10.41329 -56.60819 19 3 1177 1185 0.846690278 0.852462731 0.851746933 3 -23.80785 42.46736 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 0.9739069 1.191528 8.736710e-04 -1.6826288 0.004007951 3.7127060 2 0.9738884 1.191484 9.668737e-04 -0.8301020 0.004811205 2.9717501 4 0.9739828 1.191582 -7.589377e-04 -0.8342055 0.001941145 1.9377583 6 0.9747633 1.192432 3.710153e-05 -0.7063407 0.000938095 4.2225210 7 0.9748581 1.192508 -2.316703e-03 2.1172348 0.006655045 6.6366872 9 0.9757965 1.193574 -1.696215e-03 -0.8875886 0.004802730 8.6828773 10 0.9757989 1.193566 1.490531e-03 0.6421426 0.004616244 1.8575770 11 0.9759173 1.193695 9.493517e-04 0.2800929 0.002722741 0.8659846 13 0.9763321 1.194181 1.365581e-03 -3.3638918 0.004142774 8.5062079 14 0.9764653 1.194304 -4.121363e-03 -0.8059454 0.009923658 8.2496308 17 0.9771958 1.195094 -3.641680e-04 0.1901018 0.002204230 1.2287735 18 0.9772056 1.195096 1.125466e-03 1.2913216 0.005370118 3.8987034 19 0.9772880 1.195189 -2.240448e-03 -1.9936584 0.006576063 2.1127925 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 416.124 co2l1 = 0.96 co2l0 = 0.056" [1] "co2l0 = -104.12 co2l1 = 0.216" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "138 out of 290 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "152 out of 1200 1-min values rejected as stack air" [1] "152 out of 1200 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"