[1] "2025-04-30 01:53:08 MDT" [1] "1611" "161114" "d319" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161114a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 83460 63 [1] 83460 [1] 83460 [1] "testing skipping spike filter" [1] 83460 [1] 83460 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:53:12 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.029, ave o2scale2 = 0.841" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "6 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.029, ave o2scale2 = 0.841" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "5 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:53:12 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:53:12 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:53:28 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:53:30 MDT" [1] "reading in recalculated plot titles" [1] "Removed 5 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1384 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:53:34 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.961 co2off = 411.9 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.3 minutes" [1] "Average Cal: 8.21 minutes" [1] "Shortest Cal: 7.28 minutes" [1] "Longest Cal: 8.44 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 230 237 0.1676149 0.1726726 0.1708639 3 -32.70107 63.90193 3 4 238 246 0.1733967 0.1792568 0.1770618 3 -10.29487 -53.69958 4 3 247 255 0.1799751 0.1857473 0.1850280 3 -23.69380 48.86344 6 4 517 525 0.3750214 0.3807425 0.3786034 2 -10.31269 -57.23559 7 2 526 534 0.3814580 0.3872412 0.3850655 2 -32.73176 58.48985 10 2 806 814 0.5833591 0.5891270 0.5869524 3 -32.74716 61.74823 11 4 815 823 0.5898446 0.5956072 0.5934584 3 -10.33572 -55.20456 12 3 824 832 0.5963190 0.6020779 0.6013599 3 -23.71813 50.19333 14 4 1096 1104 0.7918983 0.7976902 0.7955065 2 -10.30384 -57.34608 15 2 1105 1113 0.7984008 0.8041338 0.8019925 2 -32.70246 59.14660 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9709708 1.188833 0.0003967134 2.30155173 0.001065376 4.8045081 3 0.9709386 1.188779 0.0027467127 -1.56959290 0.007786242 5.6356096 4 0.9709284 1.188769 -0.0019210601 0.04829558 0.005296597 0.8070921 6 0.9714261 1.189084 -0.0022529975 -1.41629953 0.005475086 3.3839546 7 0.9714101 1.189073 -0.0037423447 -1.08000473 0.010439772 2.8575192 10 0.9718072 1.189441 0.0001203017 0.04308494 0.001804168 2.8515129 11 0.9718187 1.189465 0.0027230282 0.24421823 0.006411848 2.3960285 12 0.9719778 1.189639 -0.0001734248 -0.44821880 0.002561084 0.6716962 14 0.9733317 1.190942 -0.0007644391 0.54250119 0.002207308 2.3022193 15 0.9733700 1.190972 -0.0024241655 1.21725332 0.007079612 4.0790095 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 416.066 co2l1 = 0.96 co2l0 = 0.075" [1] "co2l0 = -104.12 co2l1 = 0.217" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "183 out of 540 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "357 out of 1239 1-min values rejected as stack air" [1] "357 out of 1239 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"