[1] "2025-04-30 01:52:38 MDT" [1] "1611" "161113" "d318" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161113a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 83280 63 [1] 83280 [1] 83280 [1] "testing skipping spike filter" [1] 83280 [1] 83280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:52:42 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.029, ave o2scale2 = 0.84" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "37 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.029, ave o2scale2 = 0.84" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "37 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:52:42 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:52:42 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:52:58 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:53:00 MDT" [1] "reading in recalculated plot titles" [1] "Removed 37 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1350 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:53:03 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.961 co2off = 411.66 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.3 minutes" [1] "Average Cal: 8.23 minutes" [1] "Shortest Cal: 7.25 minutes" [1] "Longest Cal: 8.33 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 175 183 0.1262656 0.1320225 0.1298685 2 -10.09529 -47.08265 3 2 184 192 0.1327337 0.1384849 0.1363291 2 -32.47971 60.34386 6 2 447 454 0.3352940 0.3403264 0.3385375 3 -32.52084 59.20254 7 4 455 463 0.3410421 0.3467898 0.3446291 3 -10.12629 -49.71164 8 3 464 472 0.3475240 0.3533103 0.3525916 3 -23.51123 45.45194 10 4 732 740 0.5427986 0.5485843 0.5464125 2 -10.13767 -54.91103 11 2 741 749 0.5493033 0.5550715 0.5529103 2 -32.54690 48.58154 13 2 1005 1013 0.7507566 0.7565351 0.7543681 3 -32.59454 63.66203 14 4 1014 1022 0.7572535 0.7630010 0.7608576 3 -10.22101 -49.69051 16 3 1032 1040 0.7702057 0.7759882 0.7752674 3 -23.62041 45.07323 18 4 1294 1302 0.9587947 0.9645446 0.9623882 2 -10.30308 -62.33674 19 2 1303 1311 0.9652587 0.9710333 0.9688753 2 -32.69227 60.27170 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9723134 1.192536 0.0009667642 -5.2488164 0.003646437 14.563629 3 0.9725251 1.192750 -0.0061658331 1.9764923 0.014132827 9.643677 6 0.9722615 1.191520 -0.0041988113 -1.5513526 0.008183802 3.390146 7 0.9721860 1.191405 0.0033236807 0.2421023 0.007637443 7.007837 8 0.9722582 1.191449 0.0012906253 2.4984750 0.003416549 2.588668 10 0.9719610 1.190656 -0.0012826908 -2.0525442 0.005256037 5.906247 11 0.9719832 1.190742 -0.0009642667 -2.7438798 0.005794647 10.980710 13 0.9709647 1.189302 -0.0003467252 1.2527912 0.002380711 4.930491 14 0.9708336 1.189135 0.0024337975 -1.8804963 0.006969748 4.645501 16 0.9705340 1.188848 -0.0006834685 -2.5275863 0.005633657 2.632740 18 0.9702991 1.188382 -0.0025518892 0.8395656 0.006465324 5.971928 19 0.9703576 1.188432 -0.0023116346 -0.6355227 0.006836989 3.558092 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 415.947 co2l1 = 0.96 co2l0 = 0.03" [1] "co2l0 = -104.16 co2l1 = 0.229" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "101 out of 470 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "369 out of 1173 1-min values rejected as stack air" [1] "369 out of 1173 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"