[1] "2025-04-30 01:52:19 MDT" [1] "1611" "161112" "d317" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161112a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 79685 63 [1] 79685 [1] 79685 [1] "testing skipping spike filter" [1] 79685 [1] 79685 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:52:23 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.031, ave o2scale2 = 0.84" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "38 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.031, ave o2scale2 = 0.84" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "37 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:52:23 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:52:23 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:52:29 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:52:31 MDT" [1] "reading in recalculated plot titles" [1] "Removed 37 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 649 row(s) with low FLWTA" [1] "TEMP: 640 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:52:33 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.962 co2off = 411.53 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 7.95 minutes" [1] "Average Cal: 8.58 minutes" [1] "Shortest Cal: 7.22 minutes" [1] "Longest Cal: 10.23 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 5 6 [3,] 7 9 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 3 1 8 0.5036177 0.5091395 0.5087456 3 -23.54915 65.68888 2 2 9 18 0.5099270 0.5170153 0.5142588 3 -32.53436 69.23206 3 4 19 28 0.5178096 0.5249087 0.5221520 3 -10.14041 -45.63177 4 5 29 38 0.5256963 0.5328022 0.5316207 NA -12.14234 -44.50701 6 4 262 269 0.7102033 0.7157163 0.7137474 2 -10.12292 -62.18341 7 2 270 277 0.7165040 0.7220259 0.7200569 2 -32.49628 61.67125 9 2 529 536 0.9190528 0.9241026 0.9222944 3 -32.47982 60.47482 10 4 537 545 0.9248164 0.9305467 0.9283949 3 -10.11103 -57.48617 11 3 546 553 0.9312649 0.9362790 0.9359197 3 -23.47648 72.15609 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 0.9692419 1.189611 0.0047773281 -14.9468934 0.0103744478 11.987945 2 0.9694274 1.190047 -0.0003280362 2.4971939 0.0032663992 7.881508 3 0.9695339 1.190236 0.0010043824 2.8781324 0.0054411356 9.924774 4 0.9696321 1.190382 0.0001652953 0.3872749 0.0001325825 0.940239 6 0.9705013 1.191253 -0.0012910853 -2.5966095 0.0041635822 6.136555 7 0.9706371 1.191361 -0.0041487610 1.1949220 0.0096603854 3.611872 9 0.9720932 1.192768 -0.0005502949 1.3579796 0.0022449306 5.040123 10 0.9720692 1.192714 0.0016010095 -0.3016047 0.0052016445 1.964958 11 0.9722451 1.192948 -0.0027853665 12.4402023 0.0056839504 9.101865 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 415.901 co2l1 = 0.961 co2l0 = 0.03" [1] "co2l0 = -105.07 co2l1 = 0.203" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "0 out of 0 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 526 1-min values rejected as stack air" [1] "0 out of 526 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"