[1] "2025-04-30 01:50:24 MDT" [1] "1610" "161104" "d309" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161104a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 79309 63 [1] 79309 [1] 79309 [1] "testing skipping spike filter" [1] 79309 [1] 79309 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:50:28 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.022, ave o2scale2 = 0.839" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "110 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.022, ave o2scale2 = 0.839" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "110 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:50:28 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:50:28 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:50:42 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:50:43 MDT" [1] "reading in recalculated plot titles" [1] "Removed 111 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1210 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:50:49 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.964 co2off = 426.42 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.22 minutes" [1] "Average Cal: 7.5 minutes" [1] "Shortest Cal: 4.14 minutes" [1] "Longest Cal: 8.31 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 7 [4,] 8 9 [5,] 10 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 94 101 0.07322193 0.07821233 0.07642621 3 -33.19899 57.20475 3 4 102 109 0.07892153 0.08460692 0.08247125 3 -10.81438 -52.10089 4 3 110 117 0.08531629 0.09031869 0.08996415 3 -24.20926 51.24130 6 4 370 378 0.28049566 0.28622567 0.28407440 2 -10.63724 -54.21233 7 2 379 386 0.28693825 0.29264774 0.29038876 2 -33.03545 57.24375 10 2 614 621 0.48836881 0.49409936 0.49230265 2 -33.11236 59.85803 11 4 622 627 0.49697454 0.50055608 0.49948247 2 -10.73838 -57.84379 14 4 876 883 0.69718409 0.70220318 0.70040237 2 -10.97516 -62.61283 15 2 884 892 0.70291597 0.70864025 0.70649091 2 -33.35895 63.28611 17 2 1161 1169 0.90452520 0.91026811 0.90811886 3 -33.46468 57.96926 18 4 1170 1174 0.91241745 0.91529274 0.91457518 3 -11.06825 -56.65406 20 3 1184 1192 0.92392005 0.92967870 0.92896496 3 -24.45050 39.34145 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9790812 1.191733 -7.504474e-04 -2.4589826 0.004440829 8.2049884 3 0.9788634 1.191599 7.338079e-04 0.8841231 0.006722049 4.6883010 4 0.9788208 1.191630 -1.491091e-03 -3.9582213 0.003964179 2.8578949 6 0.9827680 1.196750 5.296330e-04 0.1924416 0.003347774 3.7845032 7 0.9827174 1.196703 -4.147240e-03 -1.7371966 0.012294779 4.4038389 10 0.9808960 1.195087 -1.871320e-03 -0.1021194 0.005051364 1.0384427 11 0.9807811 1.194936 -4.780335e-03 -2.1661866 0.006624607 3.5226514 14 0.9752540 1.188575 2.933603e-03 -0.1828313 0.006430852 5.2217970 15 0.9753774 1.188728 -3.404284e-03 2.1174075 0.008768391 4.9139417 17 0.9728861 1.185834 6.032884e-05 2.5213839 0.002237939 6.2591442 18 0.9732039 1.186190 -2.267855e-03 -0.4309911 0.002344375 0.8682882 20 0.9733340 1.186322 -4.865895e-03 1.9891315 0.011531885 2.0553994 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 416.591 co2l1 = 0.96 co2l0 = 0.047" [1] "co2l0 = -103.88 co2l1 = 0.219" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "43 out of 65 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "22 out of 1033 1-min values rejected as stack air" [1] "22 out of 1033 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"