[1] "2025-04-30 01:49:52 MDT" [1] "1610" "161103" "d308" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161103a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 83940 63 [1] 83940 [1] 83940 [1] "testing skipping spike filter" [1] 83940 [1] 83940 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:49:56 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.035, ave o2scale2 = 0.849" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "78 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.035, ave o2scale2 = 0.849" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "80 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:49:57 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:49:57 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:50:11 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:50:12 MDT" [1] "reading in recalculated plot titles" [1] "Removed 80 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1318 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:50:19 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.961 co2off = 412.38 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.24 minutes" [1] "Average Cal: 7.57 minutes" [1] "Shortest Cal: 2.05 minutes" [1] "Longest Cal: 8.26 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 9 [5,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 43 51 0.03266348 0.03837144 0.03623067 2 -11.22454 -59.56442 3 2 52 60 0.03908111 0.04480020 0.04264815 2 -33.63468 63.08852 6 2 330 338 0.24063047 0.24636603 0.24421096 3 -33.77637 64.62105 7 4 339 347 0.24709227 0.25281554 0.25068302 3 -11.39926 -50.79217 8 3 348 356 0.25352587 0.25925315 0.25852752 3 -24.78171 39.28237 10 4 620 627 0.44937242 0.45436421 0.45257308 2 -11.45031 -57.98170 11 2 628 636 0.45507917 0.46081531 0.45866178 2 -33.85228 63.03644 13 2 893 900 0.65737538 0.66237066 0.66058249 2 -33.79116 64.58012 14 4 901 909 0.66308510 0.66880530 0.66665742 2 -11.38385 -59.93379 18 4 1139 1147 0.86459754 0.87032396 0.86817605 2 -11.10746 -58.40672 19 2 1148 1155 0.87103426 0.87672928 0.87447589 2 -33.48009 60.79570 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9669105 1.178771 -0.0053669289 -0.5760931 0.013164121 4.826516 3 0.9669293 1.178765 -0.0024514078 3.0212904 0.007122937 9.601517 6 0.9637885 1.174872 -0.0023118845 0.4812055 0.007663277 7.844730 7 0.9635130 1.174555 -0.0026484973 1.3436909 0.006254106 7.665443 8 0.9635129 1.174525 0.0030930273 4.1878304 0.007421263 4.471077 10 0.9631844 1.173758 -0.0010467498 -2.4833562 0.002546750 6.662191 11 0.9631758 1.173745 -0.0033843928 -2.4152457 0.007727863 9.082831 13 0.9652549 1.175830 -0.0042260824 -0.8717698 0.008248745 3.235530 14 0.9654172 1.175989 0.0015226239 -0.6796552 0.006412559 2.272326 18 0.9717867 1.183174 -0.0007181543 -0.6735609 0.002182094 3.903257 19 0.9720147 1.183493 -0.0028266817 8.1905973 0.007883641 20.340840 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 417.037 co2l1 = 0.96 co2l0 = 0.048" [1] "co2l0 = -104.1 co2l1 = 0.211" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "25 out of 25 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1152 1-min values rejected as stack air" [1] "0 out of 1152 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"