[1] "2025-04-30 01:49:21 MDT" [1] "1610" "161102" "d307" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161102a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 83820 63 [1] 83820 [1] 83820 [1] "testing skipping spike filter" [1] 83820 [1] 83820 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:49:25 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.03, ave o2scale2 = 0.845" [1] "Removing 1 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "73 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.03, ave o2scale2 = 0.845" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "73 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:49:26 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:49:26 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:49:40 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:49:41 MDT" [1] "reading in recalculated plot titles" [1] "Removed 73 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1322 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:49:47 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.968 co2off = 421.4 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 7.24 minutes" [1] "Average Cal: 6.9 minutes" [1] "Shortest Cal: 2.05 minutes" [1] "Longest Cal: 8.29 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 3 [3,] 4 6 [4,] 7 8 [5,] 9 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 3 4 12 0.003971817 0.009693056 0.008983893 1 -24.56434 50.19351 4 4 252 257 0.199992072 0.203575868 0.202496824 2 -10.80698 -49.48501 5 2 258 265 0.205725550 0.211442882 0.209543716 2 -33.19049 60.38822 7 2 520 527 0.408065307 0.413091782 0.411298563 3 -33.12084 67.30006 8 4 528 536 0.413810532 0.419559346 0.417405775 3 -10.72693 -51.77281 10 3 546 554 0.426686603 0.432424855 0.431708671 3 -24.11077 44.28291 12 4 802 809 0.616425289 0.621427228 0.619640765 2 -11.06547 -56.53112 13 2 810 817 0.622143634 0.627146238 0.625358189 2 -33.47778 64.62499 15 2 1082 1089 0.824920370 0.829915654 0.828133295 3 -33.67430 55.42035 16 4 1090 1094 0.832785098 0.835650463 0.834937481 3 -11.27494 -53.64619 17 3 1095 1103 0.837083015 0.842838542 0.842122386 3 -24.66026 50.17846 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9660814 1.179172 -8.065067e-04 2.0257220 0.002164419 2.721537 4 0.9746245 1.188084 1.262292e-03 -0.9081271 0.002020968 4.010046 5 0.9754293 1.189075 -3.696481e-03 4.2541603 0.008635147 13.053215 7 0.9774231 1.191566 -1.158782e-03 0.9762848 0.004250505 2.395436 8 0.9772768 1.191425 1.724365e-03 -0.3487760 0.007419132 2.410934 10 0.9773577 1.191533 1.824597e-05 -8.4356440 0.007317192 8.825498 12 0.9693162 1.182753 -1.477590e-03 -3.0728522 0.004033986 7.948535 13 0.9690846 1.182488 -6.345903e-03 3.2961031 0.012519968 11.251913 15 0.9654000 1.177628 9.033116e-04 8.9631990 0.003601522 23.809312 16 0.9658517 1.177573 -5.534497e-03 5.3865555 0.005753056 6.914631 17 0.9656027 1.177654 8.963595e-04 -3.1766983 0.003650134 3.456560 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 416.742 co2l1 = 0.96 co2l0 = 0.074" [1] "co2l0 = -104.61 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "0 out of 0 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1183 1-min values rejected as stack air" [1] "0 out of 1183 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"