[1] "2025-04-30 01:48:52 MDT" [1] "1610" "161101" "d306" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161101a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 83760 63 [1] 83760 [1] 83760 [1] "testing skipping spike filter" [1] 83760 [1] 83760 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:48:56 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.039, ave o2scale2 = 0.85" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "138 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.039, ave o2scale2 = 0.85" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "138 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:48:56 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:48:56 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:49:11 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:49:13 MDT" [1] "reading in recalculated plot titles" [1] "Removed 138 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1256 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:49:16 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.962 co2off = 421.92 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.22 minutes" [1] "Average Cal: 7.24 minutes" [1] "Shortest Cal: 3.11 minutes" [1] "Longest Cal: 8.36 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 7 [4,] 8 9 [5,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 218 225 0.1595242 0.1645379 0.1627367 3 -33.37983 62.20342 3 4 226 234 0.1653173 0.1710650 0.1689083 3 -10.94658 -66.85965 5 3 244 252 0.1782054 0.1839298 0.1832160 3 -24.34463 37.32680 7 4 506 514 0.3667549 0.3725130 0.3703499 2 -11.19771 -61.63335 8 2 515 523 0.3732346 0.3789469 0.3768037 2 -33.63329 63.01846 10 2 759 765 0.5753672 0.5804011 0.5788253 2 -33.83100 59.66708 11 4 766 774 0.5811134 0.5868491 0.5846995 2 -11.41354 -62.53856 14 4 1020 1027 0.7834929 0.7885253 0.7867281 2 -11.35252 -54.23947 15 2 1028 1036 0.7892413 0.7950027 0.7928494 2 -33.75808 57.16238 18 2 1246 1252 0.9917727 0.9968108 0.9952350 2 -33.60219 55.42027 19 4 1253 1256 0.9975345 0.9996950 0.9993367 2 -11.21206 -57.70755 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9661338 1.181551 0.0009421372 -5.9391245 0.002976908 14.4062612 3 0.9660410 1.181386 0.0026414975 -6.5040790 0.006487941 14.8859003 5 0.9659975 1.181327 -0.0036331845 -0.1493329 0.008573898 0.8125086 7 0.9614068 1.176413 -0.0002152155 -1.0319718 0.002323694 3.0592557 8 0.9613339 1.176364 -0.0051656463 5.0973415 0.012116337 14.6587505 10 0.9583061 1.172203 0.0018495984 0.9428841 0.003928058 17.9981547 11 0.9583660 1.172196 0.0017337400 0.6849262 0.004789816 6.1230725 14 0.9603589 1.174042 -0.0003036400 -2.8839124 0.001540427 6.6585444 15 0.9606755 1.174328 -0.0020665080 4.3035705 0.006835846 10.7661579 18 0.9652236 1.178305 0.0005783542 -5.0209160 0.001859653 10.7989867 19 0.9653774 1.178440 0.0076314302 -1.1045377 0.005568466 0.8059539 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 416.94 co2l1 = 0.959 co2l0 = 0.12" [1] "co2l0 = -103.4 co2l1 = 0.212" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "51 out of 135 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "84 out of 1099 1-min values rejected as stack air" [1] "84 out of 1099 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"