[1] "2025-04-30 01:48:23 MDT" [1] "1610" "161031" "d305" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161031a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 83820 63 [1] 83820 [1] 83820 [1] "testing skipping spike filter" [1] 83820 [1] 83820 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:48:27 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.03, ave o2scale2 = 0.843" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "48 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.03, ave o2scale2 = 0.843" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 2 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "50 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:48:28 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:48:28 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:48:43 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:48:44 MDT" [1] "reading in recalculated plot titles" [1] "Removed 50 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1346 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:48:47 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.961 co2off = 411.88 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.24 minutes" [1] "Average Cal: 7.85 minutes" [1] "Shortest Cal: 5.14 minutes" [1] "Longest Cal: 8.27 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 162 170 0.1175339 0.1232583 0.1211048 2 -10.58729 -57.47739 3 2 171 179 0.1239702 0.1296696 0.1275309 2 -33.01696 64.70912 5 2 424 431 0.3265652 0.3316006 0.3298014 3 -33.05582 57.47925 6 4 432 440 0.3323195 0.3380389 0.3358920 3 -10.64554 -71.89093 7 3 441 449 0.3387530 0.3444930 0.3437689 3 -24.04352 38.18554 9 4 705 713 0.5342847 0.5400101 0.5378602 2 -10.65749 -52.90603 10 2 714 722 0.5407272 0.5464672 0.5443126 2 -33.06669 59.28860 13 2 988 996 0.7425732 0.7482946 0.7461406 3 -33.11697 54.72341 14 4 997 1005 0.7490081 0.7547383 0.7525877 3 -10.71177 -61.87333 15 3 1006 1014 0.7554507 0.7611558 0.7604445 3 -24.11083 52.12141 17 4 1279 1287 0.9509647 0.9566968 0.9545482 2 -10.81506 -66.40325 18 2 1288 1295 0.9574113 0.9624199 0.9606329 2 -33.22448 59.35038 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9719134 1.187651 -0.0039620377 1.9665544 0.009071455 6.820140 3 0.9716405 1.187377 -0.0026756935 5.8816914 0.008574494 14.930850 5 0.9716821 1.187078 -0.0019633718 0.1023472 0.003884749 2.905879 6 0.9716443 1.186974 0.0045699051 7.5175251 0.012321840 22.574875 7 0.9716761 1.186994 -0.0012183513 -5.4920220 0.003711208 5.729397 9 0.9717837 1.187150 0.0008238816 0.9129975 0.002555485 4.072267 10 0.9717956 1.187108 -0.0031618389 -0.8608585 0.007440826 2.660664 13 0.9712051 1.186450 -0.0022402440 -3.0512397 0.005343885 7.375940 14 0.9709689 1.186211 0.0004842159 6.4566585 0.004095016 21.187678 15 0.9707955 1.186103 -0.0019571509 3.6776959 0.005690557 6.486773 17 0.9693428 1.184721 -0.0008732978 -0.4069424 0.002551041 9.384896 18 0.9693793 1.184738 -0.0043245998 -3.8773445 0.008550006 7.578456 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 416.423 co2l1 = 0.959 co2l0 = 0.052" [1] "co2l0 = -103.37 co2l1 = 0.208" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "5 out of 15 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "10 out of 1182 1-min values rejected as stack air" [1] "10 out of 1182 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"