[1] "2025-04-30 01:48:00 MDT" [1] "1610" "161030" "d304" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161030a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 83732 63 [1] 83732 [1] 83732 [1] "testing skipping spike filter" [1] 83732 [1] 83732 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:48:04 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.022, ave o2scale2 = 0.837" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "30 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.022, ave o2scale2 = 0.837" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "29 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:48:04 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:48:04 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:48:14 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:48:15 MDT" [1] "reading in recalculated plot titles" [1] "Removed 29 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1363 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:48:18 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.963 co2off = 416.14 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.27 minutes" [1] "Average Cal: 8.45 minutes" [1] "Shortest Cal: 7.17 minutes" [1] "Longest Cal: 9.35 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 13 [6,] 14 16 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 231 239 0.1678722 0.1736319 0.1714713 3 -32.53921 51.99762 3 4 240 248 0.1743450 0.1800819 0.1779290 3 -10.14140 -55.01220 5 3 258 265 0.1872668 0.1922759 0.1919211 3 -23.53867 63.92074 7 4 520 528 0.3762941 0.3820179 0.3798776 2 -10.15869 -46.72129 8 2 529 536 0.3827288 0.3877099 0.3859309 2 -32.58550 66.19754 10 2 810 818 0.5845382 0.5902176 0.5880895 3 -32.60854 51.83216 11 4 819 827 0.5909324 0.5966454 0.5945027 3 -10.21571 -68.01294 12 3 828 836 0.5973571 0.6030551 0.6023408 3 -23.60583 47.86584 14 4 1097 1104 0.7933469 0.7983360 0.7965563 2 -10.35572 -59.48271 15 2 1105 1113 0.7990467 0.8048024 0.8026470 2 -32.76954 51.64442 18 3 1174 1183 0.8557589 0.8622079 0.8611364 3 -23.80470 41.81293 19 2 1184 1193 0.8629277 0.8693766 0.8668662 3 -32.83472 61.86490 20 4 1194 1203 0.8700930 0.8765853 0.8740652 3 -10.44062 -53.27108 23 3 1238 1247 0.9096562 0.9161148 0.9150413 3 -23.83380 46.49235 24 2 1248 1257 0.9168259 0.9232487 0.9207552 3 -32.85255 59.36391 25 4 1258 1267 0.9239621 0.9303772 0.9278852 3 -10.45162 -66.67685 26 5 1268 1277 0.9310899 0.9375058 0.9364282 NA -12.62834 -56.47593 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9794827 1.195994 -0.0027716397 -2.04244966 0.006375686 7.9904258 3 0.9793479 1.195804 0.0043908969 -0.64188651 0.010713714 7.3769161 5 0.9794686 1.195860 -0.0018429681 8.39582461 0.004170332 6.0666108 7 0.9796580 1.195775 -0.0026875753 -3.40315356 0.006076444 15.4902266 8 0.9794831 1.195632 -0.0039398175 -3.16396021 0.007868946 8.5036772 10 0.9793697 1.195329 -0.0035419429 -9.19412170 0.007902293 23.5748399 11 0.9789962 1.194918 0.0015257550 -4.52400691 0.004762964 10.8755410 12 0.9789274 1.194856 -0.0038507903 -0.68276414 0.008738215 0.9281167 14 0.9769047 1.192622 -0.0013981603 1.04631645 0.002947655 3.5585089 15 0.9769670 1.192691 -0.0052869963 -2.24909030 0.012493741 7.5469436 18 0.9755634 1.191123 -0.0006613028 -0.08463609 0.001922156 2.0768785 19 0.9754901 1.191037 -0.0002120249 0.76766233 0.002598720 7.6895729 20 0.9752853 1.190768 0.0016412628 -1.78186835 0.006577868 7.7924905 23 0.9753323 1.190759 -0.0017664717 -4.13104941 0.005176219 6.0859190 24 0.9753126 1.190763 -0.0009995123 0.97969498 0.004253076 7.1718823 25 0.9751785 1.190678 0.0008375579 -6.52619748 0.004264607 17.1543716 26 0.9749809 1.190549 -0.0051089918 -2.67919642 0.003756505 4.1675857 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 416.049 co2l1 = 0.96 co2l0 = 0.068" [1] "co2l0 = -103.75 co2l1 = 0.215" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "32 out of 200 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "168 out of 1092 1-min values rejected as stack air" [1] "168 out of 1092 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"