[1] "2025-04-30 01:47:31 MDT" [1] "1610" "161029" "d303" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161029a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84060 63 [1] 84060 [1] 84060 [1] "testing skipping spike filter" [1] 84060 [1] 84060 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:47:35 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.013, ave o2scale2 = 0.831" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "24 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.013, ave o2scale2 = 0.831" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "26 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:47:35 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:47:35 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:47:50 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:47:51 MDT" [1] "reading in recalculated plot titles" [1] "Removed 26 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1374 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:47:55 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.963 co2off = 409.44 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.22 minutes" [1] "Average Cal: 7.83 minutes" [1] "Shortest Cal: 6.16 minutes" [1] "Longest Cal: 8.25 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 175 183 0.1265395 0.1322482 0.1301038 2 -9.532536 -49.70070 3 2 184 191 0.1329708 0.1379920 0.1362003 2 -31.947083 41.22539 5 2 465 473 0.3343778 0.3400935 0.3379503 3 -31.964286 60.85938 6 4 474 482 0.3408169 0.3465227 0.3443842 3 -9.560152 -54.35313 7 3 483 491 0.3472326 0.3529393 0.3522175 3 -22.949170 42.46072 9 4 755 763 0.5428553 0.5485868 0.5464291 2 -9.678411 -60.77750 10 2 764 772 0.5492982 0.5550126 0.5528707 2 -32.093670 65.19203 13 2 1036 1042 0.7525661 0.7568438 0.7554191 3 -32.301875 66.29388 14 4 1043 1051 0.7575538 0.7632468 0.7611065 3 -9.901196 -45.04334 15 3 1052 1060 0.7639567 0.7696521 0.7689422 3 -23.285786 45.80344 17 4 1320 1328 0.9594358 0.9651421 0.9630051 2 -9.986348 -60.08435 18 2 1329 1336 0.9658520 0.9708573 0.9690672 2 -32.406302 53.59323 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9902681 1.206711 0.0007789575 -4.0498685 0.002976439 13.876742 3 0.9903282 1.206798 -0.0040957578 -1.4458388 0.008895721 18.032674 5 0.9902959 1.206591 -0.0031224369 0.6337516 0.006995149 5.385481 6 0.9901864 1.206438 0.0044233351 1.3821414 0.010192666 4.948133 7 0.9901589 1.206499 -0.0007572638 0.7345024 0.002142001 3.533661 9 0.9875439 1.204022 0.0012418409 0.3246574 0.004927053 2.267706 10 0.9874653 1.203960 -0.0032312411 0.2451085 0.007799298 6.044226 13 0.9838215 1.200007 -0.0033715074 -11.0036404 0.005811660 28.487755 14 0.9837477 1.200039 0.0021626586 -0.7038395 0.005775355 9.499178 15 0.9840162 1.200336 0.0008531679 -2.1646982 0.005244771 2.532113 17 0.9815834 1.197965 -0.0008719142 -2.0567922 0.003316793 10.743514 18 0.9816161 1.197963 -0.0027024102 -1.5428603 0.006254176 7.371674 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 415.51 co2l1 = 0.96 co2l0 = 0.078" [1] "co2l0 = -103.78 co2l1 = 0.232" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "143 out of 355 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "212 out of 1210 1-min values rejected as stack air" [1] "212 out of 1210 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"