[1] "2025-04-30 01:47:10 MDT" [1] "1610" "161028" "d302" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161028a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 79354 63 [1] 79354 [1] 79354 [1] "testing skipping spike filter" [1] 79354 [1] 79354 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:47:14 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.008, ave o2scale2 = 0.828" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "40 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.008, ave o2scale2 = 0.828" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "39 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:47:14 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:47:14 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:47:22 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:47:23 MDT" [1] "reading in recalculated plot titles" [1] "Removed 39 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 2 row(s) with variable TFCELL" [1] "TEMP: 1279 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:47:25 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.964 co2off = 407.27 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.43 minutes" [1] "Average Cal: 7.98 minutes" [1] "Shortest Cal: 1.02 minutes" [1] "Longest Cal: 9.3 minutes" [1] "Removed 4 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 215 223 0.1618125 0.1676045 0.1654386 2 -9.142143 -57.11684 3 2 224 232 0.1683213 0.1741240 0.1719464 2 -31.525589 56.75730 6 2 501 509 0.3699883 0.3758526 0.3736506 3 -31.697411 59.27098 7 4 510 518 0.3765828 0.3824824 0.3802728 3 -9.291384 -54.35045 8 3 519 526 0.3832058 0.3890737 0.3887046 3 -22.689938 49.30466 10 4 782 790 0.5780560 0.5839303 0.5817340 2 -9.388652 -54.84125 11 2 791 799 0.5846629 0.5905225 0.5883091 2 -31.797777 63.03004 13 2 1067 1075 0.7864341 0.7922909 0.7901016 3 -31.884848 56.50971 14 4 1076 1084 0.7930047 0.7988246 0.7966289 3 -9.492089 -55.96281 16 3 1094 1102 0.8060948 0.8120015 0.8112636 3 -22.890429 42.95536 19 4 1188 1196 0.9324301 0.9388894 0.9364369 1 -9.520070 -61.48661 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9940800 1.209503 0.0015338098 -0.89797742 0.003530137 4.1597573 3 0.9942075 1.209654 -0.0033464910 -0.08055009 0.008588529 1.1279812 6 0.9922621 1.207345 -0.0027033876 0.59612493 0.006605598 2.6664315 7 0.9921416 1.207216 0.0001495176 1.06053202 0.002917134 4.7203762 8 0.9917877 1.207122 -0.0015647155 -0.97448414 0.004313089 0.7324754 10 0.9903390 1.205703 0.0008656979 0.98360053 0.002080683 3.7974815 11 0.9904502 1.205794 -0.0034937167 0.72211129 0.010314637 3.7775515 13 0.9902836 1.205589 -0.0032859435 0.81033145 0.007946505 2.6018233 14 0.9902445 1.205552 0.0011386575 1.02170230 0.004174398 3.0857913 16 0.9903401 1.205668 -0.0017893865 -1.83885630 0.004215304 1.9620787 19 0.9905217 1.207539 0.0034564265 -0.53577358 0.009534358 6.4819715 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 415.167 co2l1 = 0.96 co2l0 = 0.037" [1] "co2l0 = -103.88 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "164 out of 705 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "541 out of 1085 1-min values rejected as stack air" [1] "13 out of 54 Line 1 1-min values rejected as stack air" [1] "528 out of 1031 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"