[1] "2025-04-30 01:46:10 MDT" [1] "1610" "161026" "d300" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161026a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 82140 63 [1] 82140 [1] 82140 [1] "testing skipping spike filter" [1] 82140 [1] 82140 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:46:14 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.007, ave o2scale2 = 0.825" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "96 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.007, ave o2scale2 = 0.825" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "98 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:46:14 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:46:14 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:46:29 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:46:31 MDT" [1] "reading in recalculated plot titles" [1] "Removed 98 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1270 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:46:34 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.965 co2off = 407.76 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.4 minutes" [1] "Average Cal: 7.82 minutes" [1] "Shortest Cal: 1.04 minutes" [1] "Longest Cal: 8.49 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 6 [4,] 7 9 [5,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 102 107 0.07877127 0.08390385 0.08280843 2 -9.074422 -51.72749 3 2 108 116 0.08462992 0.09048180 0.08828497 2 -31.475045 58.36430 6 4 376 384 0.29282827 0.29866615 0.29646985 2 -8.966991 -52.56767 8 3 394 402 0.30592127 0.31181010 0.31108004 2 -22.342330 50.39257 10 4 622 630 0.49463174 0.50048252 0.49828241 2 -8.876089 -60.71266 11 2 631 639 0.50120573 0.50710000 0.50487439 2 -31.265107 61.00022 13 2 869 876 0.70298819 0.70880639 0.70686080 3 -31.154713 56.16472 14 4 877 884 0.70953024 0.71534876 0.71316129 3 -8.765954 -49.66289 15 3 885 893 0.71607399 0.72187373 0.72114141 3 -22.155920 26.09329 17 4 1149 1157 0.91094673 0.91680660 0.91463089 2 -8.653625 -53.97132 18 2 1158 1166 0.91753591 0.92339809 0.92119464 2 -31.061804 59.20820 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9870924 1.206571 3.612547e-04 0.360264994 0.001290364 0.6735845 3 0.9871996 1.206624 -1.745238e-03 1.960501215 0.007755854 6.9124086 6 0.9902675 1.209652 7.580477e-05 0.776246166 0.005377111 2.6227530 8 0.9903915 1.209711 -2.098093e-03 6.452544615 0.005228841 7.3785371 10 0.9930657 1.212379 -1.811010e-04 2.619807229 0.003198074 15.6886708 11 0.9933544 1.212688 -5.930670e-04 1.608442641 0.007218476 6.2173521 13 0.9964535 1.215128 -3.226672e-03 -0.446425659 0.007952870 4.5218032 14 0.9966750 1.215238 4.058044e-03 1.869298539 0.010638484 5.8490472 15 0.9971212 1.215257 -2.217373e-03 14.985487421 0.007543598 19.2373431 17 0.9996928 1.217223 3.870976e-04 0.076788644 0.001656741 4.6199201 18 0.9996502 1.217141 -1.525763e-03 0.004025465 0.005386425 6.9057305 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 414.69 co2l1 = 0.96 co2l0 = 0.018" [1] "co2l0 = -103.98 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "13 out of 769 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "756 out of 1104 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "756 out of 1104 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"