[1] "2025-04-30 01:45:40 MDT" [1] "1610" "161025" "d299" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161025a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 81660 63 [1] 81660 [1] 81660 [1] "testing skipping spike filter" [1] 81660 [1] 81660 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:45:44 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.013, ave o2scale2 = 0.828" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "56 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.013, ave o2scale2 = 0.828" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "56 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:45:44 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:45:44 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:45:59 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:46:00 MDT" [1] "reading in recalculated plot titles" [1] "Removed 56 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1304 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:46:04 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.965 co2off = 421.45 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.46 minutes" [1] "Average Cal: 7.77 minutes" [1] "Shortest Cal: 4.27 minutes" [1] "Longest Cal: 8.52 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 9 [5,] 10 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 51 59 0.03728834 0.04318611 0.04096046 3 -31.154420 67.62521 3 4 60 68 0.04391999 0.04983903 0.04760518 3 -8.784491 -55.45282 5 3 76 84 0.05716939 0.06301979 0.06229103 3 -22.161116 59.58553 7 4 332 340 0.24542839 0.25132934 0.24910512 2 -8.924339 -58.34287 8 2 341 349 0.25204957 0.25793374 0.25573206 2 -31.327437 64.24877 10 2 615 623 0.45355547 0.45942841 0.45723279 3 -31.507946 61.39236 11 4 624 632 0.46016357 0.46607118 0.46385871 3 -9.137286 -44.48356 12 3 633 641 0.46681701 0.47267419 0.47195628 3 -22.517857 49.43133 14 4 886 890 0.66343076 0.66782483 0.66659833 1 -9.225187 -60.03109 18 2 1136 1140 0.86989997 0.87286464 0.87212637 3 -31.527354 56.56209 19 4 1141 1145 0.87654852 0.88243255 0.88071727 3 -9.124146 -64.45740 20 3 1146 1154 0.88319702 0.88905029 0.88831568 3 -22.484866 43.00037 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9939073 1.214836 -0.0049689042 0.5043272 0.011694779 3.242858 3 0.9936690 1.214607 0.0021501677 -0.8619194 0.005763280 3.668502 5 0.9931955 1.214327 -0.0029348834 3.8865986 0.007394345 4.542553 7 0.9901323 1.210790 -0.0004702542 5.1481051 0.001707771 13.905159 8 0.9899054 1.210577 -0.0049543367 2.8554475 0.011818836 8.312700 10 0.9854431 1.205801 -0.0024114936 2.0801180 0.006337145 6.481991 11 0.9852597 1.205573 0.0034107201 -2.1841465 0.008647303 19.303155 12 0.9850337 1.205409 -0.0009421858 3.0694767 0.003687979 3.444553 14 0.9832904 1.203698 0.0021495896 -2.2254069 0.004732286 5.046912 18 0.9853939 1.205305 -0.0064924478 -4.4181300 0.007243082 4.708419 19 0.9860907 1.205977 0.0060822131 0.5341335 0.020853501 1.840430 20 0.9865858 1.206412 0.0002493723 2.3693053 0.003355350 2.510087 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 414.854 co2l1 = 0.961 co2l0 = 0.07" [1] "co2l0 = -104.35 co2l1 = 0.217" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "254 out of 835 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "581 out of 1128 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "581 out of 1128 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"