[1] "2025-04-30 01:45:10 MDT" [1] "1610" "161024" "d298" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161024a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 82740 63 [1] 82740 [1] 82740 [1] "testing skipping spike filter" [1] 82740 [1] 82740 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:45:14 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.997, ave o2scale2 = 0.817" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "10 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.997, ave o2scale2 = 0.817" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "10 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:45:15 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:45:15 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:45:29 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:45:31 MDT" [1] "reading in recalculated plot titles" [1] "Removed 10 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1367 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:45:35 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.976 co2off = 423.71 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.34 minutes" [1] "Average Cal: 7.79 minutes" [1] "Shortest Cal: 1.07 minutes" [1] "Longest Cal: 8.44 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 4 [3,] 5 6 [4,] 7 9 [5,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 3 11 0.002880382 0.008673929 0.006499215 1 -29.990866 48.48706 4 2 281 289 0.204311256 0.210070602 0.207913281 3 -30.260205 59.84991 5 4 290 298 0.210797106 0.216586400 0.214425347 3 -7.905795 -56.29371 6 3 299 307 0.217308275 0.223105642 0.222376553 3 -21.272598 43.75478 8 4 569 577 0.412241522 0.418019531 0.415844998 2 -8.132384 -52.34844 9 2 578 586 0.418745920 0.424538513 0.422364067 2 -30.515482 60.09370 12 2 856 864 0.620489612 0.626315451 0.624139592 3 -30.841991 55.44047 13 4 865 873 0.627040596 0.632835590 0.630660826 3 -8.472116 -59.56200 14 3 874 882 0.633561400 0.639358362 0.638641348 3 -21.842741 50.15118 16 4 1134 1142 0.829069444 0.834932552 0.832736884 2 -8.651188 -52.92385 17 2 1143 1151 0.835673322 0.841520920 0.839328452 2 -31.040973 63.60417 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.0106620 1.232936 -0.0055240241 -4.6811745 0.013382807 14.767071 4 1.0084561 1.230503 -0.0050439546 1.4634572 0.011448692 5.727459 5 1.0083131 1.230367 0.0018330488 0.7772039 0.005027362 3.638456 6 1.0084280 1.230499 -0.0030090281 -4.8450859 0.007073448 5.184167 8 1.0056158 1.227316 0.0009684597 -1.5132289 0.004899834 4.950074 9 1.0055179 1.227170 -0.0059942415 0.3818561 0.013777610 3.984098 12 0.9990175 1.220289 -0.0024525966 2.5787525 0.005962713 9.391152 13 0.9987622 1.220032 0.0014635020 -0.9621918 0.007291318 3.119059 14 0.9986491 1.219904 -0.0031180659 1.9057298 0.007145022 2.282616 16 0.9954231 1.216703 -0.0002724513 1.9322332 0.003048651 9.323375 17 0.9954425 1.216702 -0.0029725012 -2.5658658 0.007217407 6.473078 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 414.015 co2l1 = 0.961 co2l0 = 0.062" [1] "co2l0 = -103.67 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "175 out of 572 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "397 out of 1207 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "397 out of 1207 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"