[1] "2025-04-30 01:44:39 MDT" [1] "1610" "161023" "d297" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161023a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 82860 63 [1] 82860 [1] 82860 [1] "testing skipping spike filter" [1] 82860 [1] 82860 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:44:43 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.989, ave o2scale2 = 0.811" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "14 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.989, ave o2scale2 = 0.811" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "14 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:44:44 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:44:44 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:45:00 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:45:01 MDT" [1] "reading in recalculated plot titles" [1] "Removed 14 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1366 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:45:05 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.969 co2off = 406.76 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.34 minutes" [1] "Average Cal: 7.87 minutes" [1] "Shortest Cal: 3.11 minutes" [1] "Longest Cal: 8.48 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 11 [5,] 12 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 219 227 0.1636083 0.1695000 0.1672876 2 -6.868357 -52.91784 3 2 228 236 0.1702171 0.1759682 0.1738096 2 -29.236652 64.94590 4 5 237 244 0.1766970 0.1817933 0.1814359 NA -8.890062 -72.59493 6 2 505 513 0.3721519 0.3779408 0.3757647 3 -29.239071 56.61298 7 4 514 522 0.3786711 0.3844581 0.3822812 3 -6.880991 -49.54793 8 3 523 531 0.3851803 0.3909805 0.3902429 3 -20.253277 50.38236 10 4 790 798 0.5802422 0.5859999 0.5838404 2 -7.087062 -54.41927 11 2 799 807 0.5867146 0.5924944 0.5903173 2 -29.464188 54.83752 13 2 1077 1085 0.7884126 0.7942098 0.7920361 3 -29.799741 54.35696 14 4 1086 1094 0.7949297 0.8007530 0.7985651 3 -7.430554 -58.07523 16 3 1104 1112 0.8080240 0.8138281 0.8131026 3 -20.801223 30.16228 18 4 1363 1366 0.9970596 0.9992199 0.9988638 1 -7.610219 -49.74384 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.011503 1.234409 -0.0018230481 -0.08774532 0.004742828 7.7294378 3 1.011495 1.234424 -0.0024031098 -0.78499444 0.005917164 4.7914739 4 1.011363 1.234269 -0.1001942440 3.39102847 0.148934366 2.4685549 6 1.012323 1.235276 -0.0028406515 -0.87933682 0.008710658 3.5603925 7 1.012103 1.235037 0.0052676904 -0.29607263 0.013133302 5.2667822 8 1.011867 1.234818 -0.0030384518 2.63513045 0.007955021 2.8603569 10 1.010919 1.233501 -0.0001019241 0.93482849 0.001856857 2.4774787 11 1.011027 1.233649 -0.0022183507 -0.69317753 0.006532969 4.7186259 13 1.009180 1.231461 -0.0038814285 -1.93480772 0.008914045 4.7818540 14 1.009285 1.231577 0.0013371922 0.23061156 0.005577161 1.9282404 16 1.009790 1.232171 -0.0021259072 -2.06794118 0.006253942 2.7224756 18 1.010320 1.232596 -0.0044481456 0.59316176 0.003226175 0.4302115 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 413.072 co2l1 = 0.961 co2l0 = 0.051" [1] "co2l0 = -103.61 co2l1 = 0.229" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "150 out of 538 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "388 out of 1208 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "388 out of 1208 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"