[1] "2017-09-20 21:02:30 MDT"
[1] "1610"
[1] "reading in daily output files:"
 [1] "/net/www/docs/homes/stephens/GO2/1610/161023.html"  
 [2] "/net/www/docs/homes/stephens/GO2/1610/161024.html"  
 [3] "/net/www/docs/homes/stephens/GO2/1610/161025.html"  
 [4] "/net/www/docs/homes/stephens/GO2/1610/161026.html"  
 [5] "/net/www/docs/homes/stephens/GO2/1610/161027.html"  
 [6] "/net/www/docs/homes/stephens/GO2/1610/161028.html"  
 [7] "/net/www/docs/homes/stephens/GO2/1610/161029.html"  
 [8] "/net/www/docs/homes/stephens/GO2/1610/161030.html"  
 [9] "/net/www/docs/homes/stephens/GO2/1610/161031.html"  
[10] "/net/www/docs/homes/stephens/GO2/1610/161101.html"  
[11] "/net/www/docs/homes/stephens/GO2/1610/161102.html"  
[12] "/net/www/docs/homes/stephens/GO2/1610/161103.html"  
[13] "/net/www/docs/homes/stephens/GO2/1610/161104.html"  
[14] "/net/www/docs/homes/stephens/GO2/1610/lmg_1610.html"
 [1] "/net/www/docs/homes/stephens/GO2/1610/161023.html"
 [2] "/net/www/docs/homes/stephens/GO2/1610/161024.html"
 [3] "/net/www/docs/homes/stephens/GO2/1610/161025.html"
 [4] "/net/www/docs/homes/stephens/GO2/1610/161026.html"
 [5] "/net/www/docs/homes/stephens/GO2/1610/161027.html"
 [6] "/net/www/docs/homes/stephens/GO2/1610/161028.html"
 [7] "/net/www/docs/homes/stephens/GO2/1610/161029.html"
 [8] "/net/www/docs/homes/stephens/GO2/1610/161030.html"
 [9] "/net/www/docs/homes/stephens/GO2/1610/161031.html"
[10] "/net/www/docs/homes/stephens/GO2/1610/161101.html"
[11] "/net/www/docs/homes/stephens/GO2/1610/161102.html"
[12] "/net/www/docs/homes/stephens/GO2/1610/161103.html"
[13] "/net/www/docs/homes/stephens/GO2/1610/161104.html"
[1] "161023" "161104"
 [1] "161023" "161024" "161025" "161026" "161027" "161028" "161029" "161030"
 [9] "161031" "161101" "161102" "161103" "161104"
[1] "000000" "999999"
[1] "161023_mr_proc.txt, 161023_cal_periods.txt, 161023_cal_param.txt,1366jogs"
[1] "161024_mr_proc.txt, 161024_cal_periods.txt, 161024_cal_param.txt,1367jogs"
[1] "161025_mr_proc.txt, 161025_cal_periods.txt, 161025_cal_param.txt,1304jogs"
[1] "161026_mr_proc.txt, 161026_cal_periods.txt, 161026_cal_param.txt,1271jogs"
[1] "161027_mr_proc.txt, 161027_cal_periods.txt, 161027_cal_param.txt,1363jogs"
[1] "161028_mr_proc.txt, 161028_cal_periods.txt, 161028_cal_param.txt,1279jogs"
[1] "161029_mr_proc.txt, 161029_cal_periods.txt, 161029_cal_param.txt,1374jogs"
[1] "161030_mr_proc.txt, 161030_cal_periods.txt, 161030_cal_param.txt,1363jogs"
[1] "161031_mr_proc.txt, 161031_cal_periods.txt, 161031_cal_param.txt,1346jogs"
[1] "161101_mr_proc.txt, 161101_cal_periods.txt, 161101_cal_param.txt,1258jogs"
[1] "161102_mr_proc.txt, 161102_cal_periods.txt, 161102_cal_param.txt,1325jogs"
[1] "161103_mr_proc.txt, 161103_cal_periods.txt, 161103_cal_param.txt,1317jogs"
[1] "161104_mr_proc.txt, 161104_cal_periods.txt, 161104_cal_param.txt,1207jogs"
[1] "161023" "161104" "d297"   "d309"  
[1] "Calculating derived concentration values"
[1] "2017-09-20 21:02:53 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 1.016, ave o2scale2 = 0.833"
[1] "redoing deltadiff calc"
[1] "reading in medium-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2017-09-20 21:03:11 MDT"
[1] "Plotting O2 and CO2 concentration data"
[1] "2017-09-20 21:03:35 MDT"
[1] "2017-09-20 21:03:41 MDT"
[1] "Reading in cylinder log"
Read 74 records
[1] "Finding cylinder IDs"
Read 428 records
[1] "position 1 cylinder CB08910 description: HS CO2 = 384.48 O2 = -529.8"
[1] "position 2 cylinder CA07671 description: MS CO2 = 393.12 O2 = -532.4"
[1] "position 3 cylinder CB08911 description: LS CO2 = 405.97 O2 = -656.4"
[1] "position 4 cylinder CB08905 description: LT CO2 = 404.14 O2 = -661.5"
[1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA"
[1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA"
[1] "Plotting jog shapes"
[1] "1610 Valve transient for  Line 1 after Cal = -0.09 , -0.09 , 0.02 , 0 , 0 n = 33"
[1] "1610 Valve transient for  Line 2 after Cal = -0.96 , -0.47 , -0.01 , -0.07 , -0.07 n = 27"
[1] "1610 Valve transient for  Line 1 after HS = -1.67 , -0.83 , -0.03 , -0.01 , 0 n = 11"
[1] "1610 Valve transient for  Line 1 after MS = -0.72 , -0.31 , 0 , 0 , 0 n = 15"
[1] "1610 Valve transient for  Line 1 after LT = 1.81 , 1.32 , 0.4 , 0.05 , 0.03 n = 7"
[1] "1610 Valve transient for  Line 2 after HS = -0.96 , -0.47 , 0.22 , 0.03 , 0 n = 9"
[1] "1610 Valve transient for  Line 2 after MS = -0.53 , -0.31 , -0.08 , -0.08 , -0.07 n = 13"
[1] "1610 Valve transient for  Line 2 after LT = -4.67 , -4.73 , -3.42 , -1.67 , -1.76 n = 5"
[1] "1610 Valve transient for  HS after Line 1 = 0.02 , 0.01 , 0.01 , 0 , 0 n = 7"
[1] "1610 Valve transient for  HS after Line 2 = 0.67 , 0.35 , 0.02 , 0.01 , 0.01 n = 11"
[1] "1610 Valve transient for  HS after MS = 1.27 , 0.64 , 0.01 , 0 , 0 n = 2"
[1] "1610 Valve transient for  HS after LS = 3.17 , 1.6 , 0.02 , 0.01 , 0.01 n = 23"
[1] "1610 Valve transient for  MS after Line 1 = 0.51 , 0.26 , 0.01 , 0 , 0 n = 2"
[1] "1610 Valve transient for  MS after LS = 1.92 , 0.96 , 0.01 , 0 , 0 n = 16"
[1] "1610 Valve transient for  MS after LT = 1.67 , 0.84 , 0.01 , 0.01 , 0.01 n = 8"
[1] "1610 Valve transient for  LS after Line 1 = -1.41 , -0.7 , 0 , 0 , 0 n = 12"
[1] "1610 Valve transient for  LS after Line 2 = -1.33 , -0.66 , 0 , 0 , 0 n = 11"
[1] "1610 Valve transient for  LS after HS = -3.11 , -1.57 , -0.02 , -0.01 , -0.01 n = 23"
[1] "1610 Valve transient for  LT after HS = -1.01 , -0.49 , 0.03 , 0.03 , 0.03 n = 7"
[1] "1610 Valve transient for  LT after LS = 0.08 , 0.03 , -0.01 , -0.01 , -0.01 n = 10"
[1] "Plotting calibration sds and slopes"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "456 out of 5750 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "5294 out of 14880 1-min values rejected as stack air"
[1] "840 out of 8005 Line 1 1-min values rejected as stack air"
[1] "4454 out of 6875 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "LMG1610loxy.d297"
[1] "LMG1610loxy.d298"
[1] "LMG1610loxy.d299"
[1] "LMG1610loxy.d300"
[1] "LMG1610loxy.d301"
[1] "LMG1610loxy.d302"
[1] "LMG1610loxy.d306"
[1] "LMG1610loxy.d307"
[1] "LMG1610loxy.d308"
[1] "LMG1610loxy.d309"
[1] "calculating wind bins"
[1] "aggregating 10 min SDs"
[1] "aggregating O2s"
[1] "calculating anomalous O2s"
[1] "aggregating anomalous O2s"
[1] "aggregating anomalous O2s diurnally"
       [,1]      [,2]
 [1,] 127.5 0.2421308
 [2,] 132.5 0.4842615
 [3,] 137.5 0.2421308
 [4,] 142.5 0.2421308
 [5,] 147.5 0.4842615
 [6,] 152.5 0.4842615
 [7,] 157.5 0.4842615
 [8,] 162.5 0.2421308
 [9,] 167.5 0.4842615
[10,] 172.5 0.4842615
[11,] 177.5 2.1791768
[12,] 182.5 2.4213075
[13,] 187.5 1.4527845
[14,] 192.5 1.2106538
[15,] 197.5 0.9685230
[16,] 202.5 1.4527845
[17,] 207.5 1.2106538
[18,] 212.5 1.2106538
[19,] 217.5 0.7263923
[20,] 222.5 0.9685230
[21,] 227.5 0.2421308
[22,] 242.5 0.2421308
[23,] 262.5 0.2421308
[24,] 267.5 0.2421308
[25,] 272.5 0.2421308
       [,1]      [,2]
 [1,]  97.5 0.2421308
 [2,] 112.5 0.4842615
 [3,] 122.5 0.2421308
 [4,] 127.5 0.4842615
 [5,] 132.5 0.2421308
 [6,] 177.5 0.0000000
 [7,] 182.5 0.4842615
 [8,] 222.5 0.0000000
 [9,] 227.5 0.2421308
[10,] 232.5 0.2421308
[11,] 237.5 0.2421308
[12,] 362.5 0.2421308
[13,] 367.5 0.4842615
[14,] 372.5 0.9685230
[15,] 377.5 0.2421308
[16,] 382.5 0.2421308
[17,] 397.5 0.2421308
[18,] 427.5 0.2421308
[19,] 442.5 0.2421308
       [,1]      [,2]
 [1,] 102.5 0.2421308
 [2,] 117.5 0.2421308
 [3,] 132.5 0.2421308
 [4,] 142.5 0.2421308
 [5,] 147.5 0.2421308
 [6,] 157.5 0.2421308
 [7,] 162.5 0.2421308
 [8,] 177.5 0.4842615
 [9,] 192.5 0.4842615
[10,] 207.5 0.4842615
[11,] 222.5 0.4842615
[12,] 237.5 0.4842615
[13,] 252.5 0.4842615
[14,] 267.5 0.4842615
[15,] 282.5 0.4842615
[16,] 297.5 0.4842615
[17,] 312.5 0.2421308
[18,] 317.5 0.2421308
[19,] 327.5 0.2421308
[20,] 347.5 1.4527845
[21,] 352.5 2.6634383
[22,] 367.5 0.2421308
[23,] 382.5 0.7263923
[24,] 387.5 0.9685230
[25,] 392.5 3.3898305
[26,] 402.5 0.4842615
[27,] 407.5 0.0000000
[28,] 417.5 0.4842615
[29,] 422.5 0.2421308
[30,] 427.5 0.2421308
[31,] 432.5 1.9370460
[32,] 447.5 0.2421308
       [,1]      [,2]
 [1,]  92.5 4.6004843
 [2,] 102.5 0.2421308
 [3,] 117.5 0.2421308
 [4,] 132.5 0.2421308
 [5,] 147.5 0.2421308
 [6,] 162.5 0.2421308
 [7,] 177.5 0.2421308
 [8,] 187.5 0.4842615
 [9,] 202.5 0.2421308
[10,] 217.5 0.2421308
[11,] 232.5 0.2421308
[12,] 247.5 0.4842615
[13,] 262.5 0.2421308
[14,] 277.5 0.2421308
[15,] 287.5 0.2421308
[16,] 302.5 0.2421308
[17,] 317.5 0.4842615
[18,] 327.5 0.2421308
[19,] 332.5 2.1791768
[20,] 337.5 2.1791768
[21,] 362.5 0.2421308
[22,] 367.5 0.7263923
[23,] 372.5 1.4527845
[24,] 377.5 1.9370460
[25,] 382.5 1.6949153
[26,] 387.5 1.2106538
[27,] 392.5 2.4213075
[28,] 397.5 2.1791768
[29,] 402.5 1.6949153
[30,] 407.5 1.2106538
[31,] 412.5 0.7263923
[32,] 417.5 0.4842615
[33,] 422.5 0.7263923
[34,] 427.5 3.3898305
[35,] 432.5 4.1162228
[36,] 437.5 5.5690073
[37,] 442.5 5.8111380
[38,] 447.5 6.0532688
[1] "making cruise html"
[1] "2017-09-20 21:04:07 MDT"
[1] "plotting cyl pressures"
[1] "LMG"
[1] "making time-series html"
[1] "making latitude gradient html"
[1] "making html"