[1] "2025-04-30 01:43:17 MDT" [1] "1609" "161017" "d291" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161017a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 59922 63 [1] 59922 [1] 59922 [1] "testing skipping spike filter" [1] 59922 [1] 59922 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:43:20 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.979, ave o2scale2 = 0.803" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "17 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.979, ave o2scale2 = 0.803" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "17 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:43:20 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:43:20 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:43:31 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:43:32 MDT" [1] "reading in recalculated plot titles" [1] "Removed 18 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 980 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:43:35 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.964 co2off = 407.08 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.01 minutes" [1] "Average Cal: 7.46 minutes" [1] "Shortest Cal: 2.35 minutes" [1] "Longest Cal: 8.08 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 7 [4,] 8 9 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 4 117 124 0.1007492 0.1063271 0.1043281 2 -8.953833 -56.24373 5 3 133 140 0.1134489 0.1190264 0.1186282 2 -22.326708 40.13239 7 4 364 371 0.3023618 0.3079729 0.3059393 2 -8.893771 -56.48401 8 2 372 379 0.3087544 0.3142939 0.3122901 2 -31.284437 57.94094 10 2 625 632 0.5106025 0.5161488 0.5141557 3 -31.201594 57.99693 11 4 633 640 0.5169436 0.5225282 0.5205142 3 -8.828917 -67.76770 12 3 641 648 0.5233356 0.5289193 0.5285107 3 -22.193271 47.31387 14 4 885 891 0.7195128 0.7243428 0.7227446 2 -8.740637 -54.40980 15 2 892 899 0.7251543 0.7306974 0.7287274 2 -31.134521 61.80448 16 5 900 907 0.7315015 0.7370878 0.7366804 NA -10.630687 -53.85267 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 1.018565 1.240290 1.244357e-03 -2.2240361 0.002736234 5.3969767 5 1.018781 1.240592 -2.350538e-03 -3.3122965 0.005263029 2.6861502 7 1.020548 1.243136 -4.531470e-04 4.4318015 0.001924215 19.5162173 8 1.020925 1.243582 -4.428478e-03 -5.9291523 0.010106310 16.9799136 10 1.023040 1.246811 -2.090029e-03 -1.6669218 0.004980391 5.1692382 11 1.022971 1.246733 4.543730e-03 -3.7282501 0.010607387 9.6531973 12 1.023176 1.246998 7.315828e-05 -1.3370147 0.002883050 1.1125925 14 1.025478 1.250101 2.803121e-03 2.7194990 0.005568536 7.8800387 15 1.025635 1.250323 -1.165835e-03 0.9607991 0.003574359 3.6633228 16 1.025660 1.250350 2.803337e-02 -1.0389433 0.023069359 0.8619209 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 414.682 co2l1 = 0.961 co2l0 = 0.06" [1] "co2l0 = -103.47 co2l1 = 0.219" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "136 out of 183 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "47 out of 843 1-min values rejected as stack air" [1] "47 out of 843 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"