[1] "2025-04-30 01:42:46 MDT" [1] "1609" "161016" "d290" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161016a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 75060 63 [1] 75060 [1] 75060 [1] "testing skipping spike filter" [1] 75060 [1] 75060 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:42:50 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.99, ave o2scale2 = 0.814" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "43 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.99, ave o2scale2 = 0.814" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "45 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:42:51 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:42:51 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:43:05 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:43:06 MDT" [1] "reading in recalculated plot titles" [1] "Removed 45 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1205 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:43:11 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.964 co2off = 420.65 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8 minutes" [1] "Average Cal: 7.62 minutes" [1] "Shortest Cal: 6.81 minutes" [1] "Longest Cal: 8.15 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 6 [4,] 8 9 [5,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 63 68 0.05323383 0.05806577 0.05667538 2 -9.420895 -57.96823 3 2 69 75 0.05884974 0.06369803 0.06206980 2 -31.822325 58.74360 5 2 307 314 0.26087818 0.26647685 0.26447910 2 -31.737281 56.86084 6 4 315 322 0.26727260 0.27293116 0.27091250 2 -9.337031 -55.40033 9 4 562 569 0.46943652 0.47495130 0.47298215 2 -9.257302 -57.46082 10 2 570 577 0.47576427 0.48134598 0.47938462 2 -31.655563 62.63074 11 5 578 585 0.48215512 0.48780506 0.48739615 NA -11.608000 -52.40711 13 2 817 824 0.67766861 0.68323105 0.68126966 2 -31.566354 52.12210 14 4 825 832 0.68405165 0.68961490 0.68763635 2 -9.171771 -57.99592 17 4 1066 1072 0.88661441 0.89147318 0.88982738 2 -9.070700 -53.87485 18 2 1073 1080 0.89226027 0.89781820 0.89581708 2 -31.473292 58.83399 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.006217 1.221707 0.0023435523 -0.7850315 0.005217300 1.636405 3 1.006390 1.221985 -0.0036606884 0.7768835 0.007519558 4.649841 5 1.007863 1.224721 -0.0010024108 -1.5729058 0.003083411 5.702403 6 1.007769 1.224594 0.0007609946 1.8449824 0.003301219 5.054401 9 1.009662 1.227913 -0.0004806653 3.2261098 0.003087631 7.276657 10 1.009731 1.228016 -0.0034838351 -1.7204552 0.007767319 6.878964 11 1.009665 1.227922 -0.3601437961 6.2201666 0.292211877 5.179757 13 1.012396 1.231584 -0.0014029383 4.6772617 0.004568176 11.615205 14 1.012364 1.231607 0.0014972055 -0.6938280 0.003354723 1.795296 17 1.014972 1.235255 -0.0050207271 1.2810030 0.009747936 3.019023 18 1.014970 1.235338 -0.0019291788 -0.6576582 0.004844079 8.340894 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 415.056 co2l1 = 0.96 co2l0 = 0" [1] "co2l0 = -103.79 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "28 out of 40 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "12 out of 1055 1-min values rejected as stack air" [1] "12 out of 1055 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"