[1] "2025-04-30 01:42:27 MDT" [1] "1609" "161015" "d289" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161015a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 72214 63 [1] 72214 [1] 72214 [1] "testing skipping spike filter" [1] 72214 [1] 72214 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:42:30 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.007, ave o2scale2 = 0.829" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 2 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "56 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.007, ave o2scale2 = 0.829" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 2 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "57 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:42:30 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:42:30 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:42:38 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:42:39 MDT" [1] "reading in recalculated plot titles" [1] "Removed 57 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 6 row(s) with variable TFCELL" [1] "TEMP: 1137 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:42:41 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.962 co2off = 408.58 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.49 minutes" [1] "Average Cal: 8.07 minutes" [1] "Shortest Cal: 2.16 minutes" [1] "Longest Cal: 10.52 minutes" [1] "Removed 5 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 9 [5,] 10 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 160 168 0.1237278 0.1295867 0.1273967 2 -9.919813 -55.88785 3 2 169 177 0.1303203 0.1362396 0.1340030 2 -32.329911 59.15407 5 2 445 453 0.3322394 0.3381076 0.3359065 3 -32.310571 56.75097 6 4 454 462 0.3388335 0.3447505 0.3425146 3 -9.900616 -56.87941 7 3 463 471 0.3454856 0.3513667 0.3506371 3 -23.286268 43.48861 9 4 729 737 0.5404681 0.5463622 0.5441508 2 -9.803411 -57.60996 10 2 738 746 0.5471003 0.5529580 0.5507643 2 -32.209045 59.70897 14 2 927 936 0.7114931 0.7181788 0.7155681 2 -32.115516 58.89536 15 4 937 946 0.7189121 0.7256028 0.7229852 2 -9.703320 -50.97933 19 4 967 975 0.8604496 0.8677570 0.8651179 1 -9.599006 -69.14005 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9890013 1.200470 0.0019792276 -0.6005245 0.005261644 11.300044 3 0.9890876 1.200646 -0.0013839661 1.2263554 0.006648431 4.841008 5 0.9903843 1.202577 -0.0023168411 1.2339356 0.005618680 3.946000 6 0.9904418 1.202620 0.0029041693 0.5692234 0.007750372 4.870902 7 0.9904855 1.202734 -0.0025930113 -2.3504614 0.005974960 2.568628 9 0.9929766 1.206213 -0.0010821651 0.2127075 0.002609043 1.790634 10 0.9931071 1.206403 -0.0018514654 -0.5622135 0.004703267 2.162795 14 0.9959092 1.209458 -0.0004914475 3.7375911 0.001648102 16.833740 15 0.9962065 1.210364 0.0006543353 2.0343409 0.005437904 6.501803 19 1.0043932 1.217061 0.0027910413 5.8219558 0.011747476 22.537133 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 415.563 co2l1 = 0.96 co2l0 = 0.076" [1] "co2l0 = -104.09 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "75 out of 135 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "60 out of 947 1-min values rejected as stack air" [1] "60 out of 947 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"