[1] "2025-04-30 01:41:57 MDT" [1] "1609" "161014" "d288" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161014a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 81840 63 [1] 81840 [1] 81840 [1] "testing skipping spike filter" [1] 81840 [1] 81840 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:42:01 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.016, ave o2scale2 = 0.837" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "17 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.016, ave o2scale2 = 0.837" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "17 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:42:02 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:42:02 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:42:17 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:42:18 MDT" [1] "reading in recalculated plot titles" [1] "Removed 17 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1346 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:42:21 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.96 co2off = 421.31 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.41 minutes" [1] "Average Cal: 8.29 minutes" [1] "Shortest Cal: 7.4 minutes" [1] "Longest Cal: 8.53 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 111 119 0.08176120 0.08757396 0.08539265 3 -32.581732 58.43139 3 4 120 128 0.08831288 0.09412049 0.09194931 3 -10.153411 -66.57254 4 3 129 137 0.09485720 0.10071620 0.09998705 3 -23.544964 42.33355 6 4 395 402 0.29058929 0.29576024 0.29390684 2 -10.030448 -49.84232 7 2 403 411 0.29650709 0.30233267 0.30015858 2 -32.455295 58.99861 10 2 672 680 0.49832393 0.50414797 0.50197177 3 -32.368009 61.23878 11 4 681 689 0.50487260 0.51074919 0.50854255 3 -9.960348 -53.66807 12 3 690 698 0.51148212 0.51737008 0.51662522 3 -23.355857 50.70818 14 4 952 959 0.70743443 0.71257156 0.71074002 2 -9.970948 -53.69069 15 2 960 968 0.71334022 0.71926053 0.71704785 2 -32.396813 53.51698 17 2 1232 1240 0.91522538 0.92102966 0.91885108 3 -32.418491 52.31032 18 4 1241 1249 0.92176198 0.92765411 0.92545341 3 -9.993152 -61.50391 20 3 1259 1267 0.93498461 0.94083134 0.94008884 3 -23.404116 41.64123 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9813731 1.191294 -0.0013049430 -2.17072639 0.004029629 5.2611999 3 0.9812643 1.191183 0.0026441834 5.39405789 0.007429518 15.6812221 4 0.9812995 1.191236 -0.0010046318 3.31348415 0.002813855 3.4816174 6 0.9843508 1.194903 0.0015705084 -5.57269108 0.004114270 14.9186068 7 0.9844413 1.195088 -0.0031180622 0.27114894 0.008731209 2.8757347 10 0.9859880 1.196921 -0.0012242239 0.31854195 0.002985300 1.9911198 11 0.9859599 1.196893 0.0026274045 -3.31955263 0.008626876 7.9944421 12 0.9861358 1.197066 0.0017678474 -0.05317784 0.006838798 0.3100305 14 0.9862485 1.197387 -0.0020966715 0.33881291 0.004578724 3.6026107 15 0.9863519 1.197511 -0.0013635390 4.75911328 0.004654327 12.3347717 17 0.9861673 1.197467 -0.0034553515 -5.00451374 0.008588952 13.9077126 18 0.9861568 1.197465 0.0024823942 -2.29761067 0.009209431 5.5489275 20 0.9863108 1.197699 0.0001183636 0.58316592 0.002162786 1.1734174 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 415.783 co2l1 = 0.959 co2l0 = 0.057" [1] "co2l0 = -103.61 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "87 out of 435 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "348 out of 1156 1-min values rejected as stack air" [1] "348 out of 1156 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"