[1] "2025-04-30 01:41:29 MDT" [1] "1609" "161013" "d287" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161013a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 82020 63 [1] 82020 [1] 82020 [1] "testing skipping spike filter" [1] 82020 [1] 82020 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:41:33 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.022, ave o2scale2 = 0.841" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "35 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.022, ave o2scale2 = 0.841" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "37 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:41:33 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:41:33 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:41:47 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:41:49 MDT" [1] "reading in recalculated plot titles" [1] "Removed 37 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1329 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:41:52 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.959 co2off = 420.99 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.4 minutes" [1] "Average Cal: 8.05 minutes" [1] "Shortest Cal: 7.31 minutes" [1] "Longest Cal: 8.49 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 48 55 0.04068163 0.04578686 0.04396520 2 -10.09604 -56.78913 3 2 56 64 0.04652914 0.05232966 0.05014881 2 -32.53345 67.04600 6 2 318 326 0.24804673 0.25388501 0.25170339 3 -32.55526 53.08851 7 4 327 335 0.25461696 0.26050735 0.25829781 3 -10.12221 -49.60437 8 3 336 343 0.26123507 0.26633686 0.26596060 3 -23.53569 52.39598 10 4 599 607 0.45628591 0.46211334 0.45993664 2 -10.15884 -55.98600 11 2 608 615 0.46284659 0.46792630 0.46611010 2 -32.60061 57.05103 13 2 875 883 0.66496707 0.67082138 0.66862632 3 -32.62618 51.87321 14 4 884 892 0.67155723 0.67745596 0.67525086 3 -10.19571 -57.83289 16 3 902 910 0.68479204 0.69065781 0.68991478 3 -23.60271 42.54162 18 4 1159 1166 0.87427332 0.87943530 0.87758284 2 -10.19666 -57.62951 19 2 1167 1175 0.88016997 0.88602193 0.88382291 2 -32.64713 61.65619 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9788506 1.189909 -0.0003205109 -0.5417037 0.001539413 6.458653 3 0.9789420 1.190055 -0.0009919140 0.4603877 0.003400067 4.303202 6 0.9792183 1.190128 0.0011721740 -6.0433945 0.003137149 16.271750 7 0.9791259 1.189923 0.0008356655 -0.3120664 0.004224451 2.701871 8 0.9792467 1.190033 -0.0005076619 5.3680257 0.002392697 4.113188 10 0.9786449 1.188743 -0.0001597590 -0.9361776 0.001103886 3.526054 11 0.9787493 1.188872 -0.0060039322 -2.3654475 0.012982044 8.937457 13 0.9782656 1.188285 0.0001570548 2.3092541 0.001395878 7.197012 14 0.9781508 1.188129 0.0010285948 1.1981190 0.003999302 4.315441 16 0.9783092 1.188100 -0.0009888839 17.1366686 0.003049657 18.308775 18 0.9788110 1.188556 -0.0005075830 1.3938760 0.005080716 3.755833 19 0.9789368 1.188707 -0.0033994103 0.4211539 0.009131276 4.590851 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 415.904 co2l1 = 0.958 co2l0 = 0.056" [1] "co2l0 = -104.05 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "110 out of 300 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "190 out of 1156 1-min values rejected as stack air" [1] "190 out of 1156 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"