[1] "2025-04-30 01:40:31 MDT" [1] "1609" "161011" "d285" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161011a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 81840 63 [1] 81840 [1] 81840 [1] "testing skipping spike filter" [1] 81840 [1] 81840 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:40:35 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.007, ave o2scale2 = 0.829" [1] "Removing 1 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "21 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.007, ave o2scale2 = 0.829" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "21 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:40:35 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:40:35 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:40:52 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:40:53 MDT" [1] "reading in recalculated plot titles" [1] "Removed 21 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1341 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:40:56 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.965 co2off = 408.59 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.4 minutes" [1] "Average Cal: 7.05 minutes" [1] "Shortest Cal: 1.04 minutes" [1] "Longest Cal: 8.49 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 225 233 0.1656874 0.1715229 0.1693438 3 -31.462446 59.68483 3 4 234 242 0.1722700 0.1781045 0.1759186 3 -9.016804 -49.55194 5 3 252 260 0.1853911 0.1912246 0.1904931 3 -22.438366 45.50329 7 4 509 517 0.3741255 0.3800180 0.3778039 2 -9.174741 -59.20903 8 2 518 525 0.3807478 0.3859050 0.3840519 2 -31.635313 56.42840 10 2 791 798 0.5830405 0.5881637 0.5863507 3 -31.824344 58.31920 11 4 799 807 0.5888965 0.5947554 0.5925524 3 -9.388295 -51.59447 12 3 808 816 0.5954828 0.6013362 0.6006157 3 -22.813205 46.32523 14 4 1074 1082 0.7904315 0.7962926 0.7940812 2 -9.560679 -58.68842 15 2 1083 1087 0.7970265 0.8000008 0.7992536 2 -32.007167 59.71251 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9980951 1.213414 -0.0007127838 -0.4282698 0.003165452 3.3136386 3 0.9979475 1.213276 0.0036296358 4.3167191 0.009841943 12.9419479 5 0.9977646 1.213175 -0.0026208725 -0.7872466 0.006233356 0.9534713 7 0.9946183 1.209350 -0.0011575130 -2.8813905 0.003085253 7.5851649 8 0.9945396 1.209258 -0.0046054970 -1.2498595 0.010296010 2.9878179 10 0.9909994 1.204695 -0.0005651110 0.4520721 0.002154483 2.2311891 11 0.9908426 1.204494 0.0005995719 1.4527777 0.002718981 4.3279151 12 0.9906655 1.204284 -0.0045798395 6.6789839 0.010977588 6.9630800 14 0.9876383 1.200554 0.0017549527 1.7872292 0.005935244 20.4635809 15 0.9876162 1.200400 -0.0029035921 -16.7285553 0.003973218 18.0745375 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 415.069 co2l1 = 0.958 co2l0 = 0.046" [1] "co2l0 = -104 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "145 out of 230 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "85 out of 1194 1-min values rejected as stack air" [1] "85 out of 1194 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"