[1] "2025-04-30 01:40:02 MDT" [1] "1609" "161010" "d284" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161010a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 81720 63 [1] 81720 [1] 81720 [1] "testing skipping spike filter" [1] 81720 [1] 81720 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:40:06 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.996, ave o2scale2 = 0.819" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "11 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.996, ave o2scale2 = 0.819" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "11 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:40:06 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:40:06 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:40:22 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:40:23 MDT" [1] "reading in recalculated plot titles" [1] "Removed 11 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1350 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:40:26 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.961 co2off = 409.17 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.47 minutes" [1] "Average Cal: 7.9 minutes" [1] "Shortest Cal: 3.21 minutes" [1] "Longest Cal: 8.57 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 169 177 0.1245723 0.1304549 0.1282464 2 -8.530679 -53.18761 3 2 178 186 0.1311824 0.1370655 0.1348620 2 -30.971696 61.51846 5 2 452 460 0.3325786 0.3384891 0.3362746 3 -31.059312 55.80736 6 4 461 469 0.3392406 0.3451315 0.3429208 3 -8.624723 -57.44807 7 3 470 478 0.3458763 0.3517039 0.3509821 3 -22.036098 54.02350 9 4 734 742 0.5408263 0.5467093 0.5445030 2 -8.697705 -54.35516 10 2 743 751 0.5474517 0.5534038 0.5511712 2 -31.148384 54.07639 13 2 1016 1024 0.7489770 0.7548770 0.7526581 3 -31.204696 63.05493 14 4 1025 1033 0.7556129 0.7614632 0.7592777 3 -8.765134 -53.96979 15 3 1034 1042 0.7621943 0.7680617 0.7673293 3 -22.171375 39.70941 17 4 1300 1306 0.9574062 0.9617446 0.9602891 2 -8.845200 -49.70972 18 2 1307 1310 0.9676043 0.9698341 0.9694711 2 -31.289781 52.65641 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.007310 1.224055 1.354766e-03 2.9514413 3.599123e-03 7.2866288 3 1.007379 1.224112 -4.146735e-03 2.5786235 1.031101e-02 6.4013177 5 1.006084 1.222660 -3.261430e-03 1.6878494 7.592828e-03 7.6605354 6 1.005972 1.222513 2.991885e-03 0.2564071 7.876559e-03 11.5809165 7 1.005968 1.222450 -3.767657e-03 17.7686734 9.326671e-03 18.5042159 9 1.004149 1.220599 -1.915869e-03 -0.1622712 4.569161e-03 2.1808985 10 1.004071 1.220424 -2.688536e-03 -2.5323532 7.307283e-03 7.8442184 13 1.002984 1.219218 -2.052222e-03 -2.6156953 4.902225e-03 7.8279443 14 1.002828 1.219073 2.003053e-03 2.4965790 5.198586e-03 7.6019707 15 1.002830 1.219094 -2.795688e-03 0.3187584 7.023306e-03 0.9609388 17 1.001277 1.217172 -1.211899e-03 -6.2685628 2.458007e-03 12.2599900 18 1.001186 1.217122 5.978001e-05 -1.2453262 4.419417e-05 0.9206449 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 414.502 co2l1 = 0.958 co2l0 = 0.061" [1] "co2l0 = -104.01 co2l1 = 0.227" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "237 out of 315 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "78 out of 1188 1-min values rejected as stack air" [1] "78 out of 1188 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"