[1] "2025-04-30 01:39:34 MDT" [1] "1609" "161009" "d283" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161009a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 81540 63 [1] 81540 [1] 81540 [1] "testing skipping spike filter" [1] 81540 [1] 81540 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:39:38 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.986, ave o2scale2 = 0.812" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "28 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.986, ave o2scale2 = 0.812" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "30 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:39:38 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:39:38 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:39:53 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:39:54 MDT" [1] "reading in recalculated plot titles" [1] "Removed 30 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1328 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:39:57 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.962 co2off = 414.08 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.47 minutes" [1] "Average Cal: 8.47 minutes" [1] "Shortest Cal: 8.37 minutes" [1] "Longest Cal: 8.62 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 109 117 0.08299346 0.08886646 0.08668528 3 -30.397259 60.48450 3 4 118 126 0.08960830 0.09545411 0.09327364 3 -7.969527 -56.48831 4 3 127 135 0.09618128 0.10199115 0.10126082 3 -21.369214 50.17890 6 4 385 393 0.29122896 0.29721727 0.29497390 2 -8.064375 -53.30939 7 2 394 402 0.29795775 0.30386392 0.30163677 2 -30.503286 57.88377 10 2 652 660 0.49930741 0.50519181 0.50299217 3 -30.675821 57.42360 11 4 661 669 0.50592459 0.51180425 0.50958639 3 -8.241563 -58.15054 12 3 670 678 0.51252442 0.51840394 0.51766823 3 -21.646938 51.89772 14 4 936 944 0.70768203 0.71364936 0.71141274 2 -8.316625 -56.08691 15 2 945 953 0.71439621 0.72022703 0.71804403 2 -30.761339 54.57778 17 2 1215 1223 0.91638909 0.92230599 0.92007739 3 -30.871670 61.68259 18 4 1224 1232 0.92304031 0.92892214 0.92672112 3 -8.440411 -57.72122 20 3 1242 1250 0.93623374 0.94208073 0.94134651 3 -21.843223 47.76555 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.020733 1.239490 -0.0015532759 0.01755552 0.004684086 1.157955 3 1.020660 1.239410 0.0002277060 1.09796659 0.004192450 2.574183 4 1.020644 1.239399 -0.0013564240 -1.13682104 0.003434062 2.040800 6 1.017998 1.236213 0.0015558436 -2.57410083 0.003833786 7.097708 7 1.017963 1.236170 -0.0056306301 -1.32495669 0.013432647 3.912123 10 1.013749 1.231227 -0.0029275211 -0.64899098 0.007894357 4.561284 11 1.013481 1.230922 0.0014303688 1.29160029 0.006208928 3.290230 12 1.013512 1.230941 -0.0023167599 4.20184982 0.005788368 4.443663 14 1.011512 1.228854 0.0010095004 1.84149543 0.004066024 6.140441 15 1.011527 1.228937 -0.0015249623 2.56360461 0.004638333 7.205158 17 1.009683 1.226800 -0.0049689761 0.22645858 0.011810500 5.683706 18 1.009449 1.226523 0.0012439892 2.63427892 0.006640691 7.237673 20 1.009358 1.226388 -0.0002436487 -1.08990546 0.001705482 1.165628 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 414.038 co2l1 = 0.959 co2l0 = 0.067" [1] "co2l0 = -103.91 co2l1 = 0.219" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "146 out of 315 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "169 out of 1136 1-min values rejected as stack air" [1] "169 out of 1136 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"