[1] "2025-04-30 01:39:14 MDT" [1] "1609" "161008" "d282" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/161008a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 69889 63 [1] 69889 [1] 69889 [1] "testing skipping spike filter" [1] 69889 [1] 69889 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 01:39:17 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.979, ave o2scale2 = 0.805" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 2 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "64 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.979, ave o2scale2 = 0.805" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 2 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 3 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "67 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 01:39:18 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 01:39:18 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 01:39:25 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 01:39:26 MDT" [1] "reading in recalculated plot titles" [1] "Removed 67 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 6 row(s) with variable TFCELL" [1] "TEMP: 1089 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 01:39:29 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -522.9" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.96 co2off = 403.1 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.85 minutes" [1] "Average Cal: 8.69 minutes" [1] "Shortest Cal: 5.68 minutes" [1] "Longest Cal: 10.5 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 6 [4,] 8 8 [5,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 231 239 0.1812455 0.1873874 0.1850763 2 -7.839357 -58.81573 3 2 240 248 0.1881573 0.1943133 0.1920003 2 -30.267250 61.16247 5 2 494 501 0.3905251 0.3959176 0.3939892 3 -30.308344 54.03003 6 4 502 510 0.3967035 0.4029111 0.4005619 3 -7.892143 -53.10705 7 3 511 519 0.4036767 0.4099071 0.4091341 3 -21.284018 45.34411 10 4 635 644 0.5327013 0.5398525 0.5370772 1 -7.925086 -51.66832 11 5 645 654 0.5406578 0.5479528 0.5467505 NA -10.005031 -54.40041 13 4 667 674 0.6815712 0.6876488 0.6857383 1 -7.954767 -30.81314 14 5 675 684 0.6884104 0.6951884 0.6940521 NA -9.913719 -62.75628 16 4 920 928 0.8743765 0.8802568 0.8780426 2 -7.912929 -48.93212 17 2 929 936 0.8809949 0.8861903 0.8843194 2 -30.333094 55.02751 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.022178 1.242770 1.240381e-03 -1.3333277 0.0036262057 4.329963 3 1.022154 1.242752 -3.191288e-03 1.5293346 0.0090834528 5.596777 5 1.021153 1.241462 -4.227749e-04 -0.9777929 0.0026501032 3.629688 6 1.021065 1.241367 2.223633e-03 -1.8547170 0.0059896519 5.075178 7 1.021168 1.241444 -1.306327e-03 3.9667786 0.0033246073 5.463791 10 1.020633 1.240697 -7.687286e-04 -1.9100461 0.0036004305 11.738890 11 1.020637 1.240826 4.422363e-03 5.1938445 0.0035797281 8.194275 13 1.022946 1.241699 5.756858e-05 1.2971936 0.0009016226 20.023524 14 1.022867 1.242156 3.105824e-03 0.7935693 0.0024306796 7.021944 16 1.021750 1.240820 -3.905477e-04 1.7972755 0.0017299554 5.032553 17 1.021743 1.240826 -3.081014e-03 4.4520389 0.0067623440 12.857415 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 413.756 co2l1 = 0.959 co2l0 = 0.058" [1] "co2l0 = -104.06 co2l1 = 0.233" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "132 out of 580 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "448 out of 930 1-min values rejected as stack air" [1] "448 out of 930 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"